FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6175, 111 aa
  1>>>pF1KE6175 111 - 111 aa - 111 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2016+/-0.000291; mu= 10.8156+/- 0.018
 mean_var=68.8401+/-13.884, 0's: 0 Z-trim(117.4): 3  B-trim: 0 in 0/54
 Lambda= 0.154580
 statistics sampled from 29376 (29379) to 29376 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.344), width:  16
 Scan time:  3.780

The best scores are:                                      opt bits E(85289)
NP_006285 (OMIM: 191330,615158) cytochrome b-c1 co ( 111)  752 175.8 1.3e-44
NP_001241681 (OMIM: 191330,615158) cytochrome b-c1 ( 140)  584 138.4 2.9e-33
NP_001186904 (OMIM: 191330,615158) cytochrome b-c1 (  79)  531 126.4 6.6e-30


>>NP_006285 (OMIM: 191330,615158) cytochrome b-c1 comple  (111 aa)
 initn: 752 init1: 752 opt: 752  Z-score: 922.1  bits: 175.8 E(85289): 1.3e-44
Smith-Waterman score: 752; 100.0% identity (100.0% similar) in 111 aa overlap (1-111:1-111)

               10        20        30        40        50        60
pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
               10        20        30        40        50        60

               70        80        90       100       110 
pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
               70        80        90       100       110 

>>NP_001241681 (OMIM: 191330,615158) cytochrome b-c1 com  (140 aa)
 initn: 584 init1: 584 opt: 584  Z-score: 718.2  bits: 138.4 E(85289): 2.9e-33
Smith-Waterman score: 584; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86)

               10        20        30        40        50        60
pF1KE6 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KE6 FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK         
       ::::::::::::::::::::::::::                                  
NP_001 FRIKRALDLNLKHQILPKEQWTKYEEVFAVPALHSASYLDEKISPLSVPPDPKKSFCEAN
               70        80        90       100       110       120

>>NP_001186904 (OMIM: 191330,615158) cytochrome b-c1 com  (79 aa)
 initn: 531 init1: 531 opt: 531  Z-score: 657.9  bits: 126.4 E(85289): 6.6e-30
Smith-Waterman score: 531; 100.0% identity (100.0% similar) in 79 aa overlap (33-111:1-79)

             10        20        30        40        50        60  
pF1KE6 GKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRMFR
                                     ::::::::::::::::::::::::::::::
NP_001                               MRDDTIYEDEDVKEAIRRLPENLYNDRMFR
                                             10        20        30

             70        80        90       100       110 
pF1KE6 IKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK
               40        50        60        70         




111 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:05:25 2016 done: Tue Nov  8 10:05:26 2016
 Total Scan time:  3.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]