FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6174, 91 aa
  1>>>pF1KE6174 91 - 91 aa - 91 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4220+/-0.000239; mu= 4.7248+/- 0.015
 mean_var=96.4282+/-18.912, 0's: 0 Z-trim(123.4): 3  B-trim: 43 in 1/55
 Lambda= 0.130609
 statistics sampled from 43281 (43284) to 43281 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.507), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(85289)
NP_005995 (OMIM: 613844) cytochrome b-c1 complex s (  91)  614 124.2 2.9e-29
NP_001284495 (OMIM: 613844) cytochrome b-c1 comple (  82)  444 92.1 1.2e-19
NP_001284494 (OMIM: 613844) cytochrome b-c1 comple (  85)  443 91.9 1.4e-19


>>NP_005995 (OMIM: 613844) cytochrome b-c1 complex subun  (91 aa)
 initn: 614 init1: 614 opt: 614  Z-score: 646.2  bits: 124.2 E(85289): 2.9e-29
Smith-Waterman score: 614; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91)

               10        20        30        40        50        60
pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
               10        20        30        40        50        60

               70        80        90 
pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
       :::::::::::::::::::::::::::::::
NP_005 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
               70        80        90 

>>NP_001284495 (OMIM: 613844) cytochrome b-c1 complex su  (82 aa)
 initn: 550 init1: 443 opt: 444  Z-score: 473.8  bits: 92.1 E(85289): 1.2e-19
Smith-Waterman score: 534; 90.1% identity (90.1% similar) in 91 aa overlap (1-91:1-82)

               10        20        30        40        50        60
pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
       ::::::::::::::::::         :::::::::::::::::::::::::::::::::
NP_001 MGLEDEQKMLTESGDPEE---------DPLTTVREQCEQLEKCVKARERLELCDERVSSR
               10                 20        30        40        50 

               70        80        90 
pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
       :::::::::::::::::::::::::::::::
NP_001 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
              60        70        80  

>>NP_001284494 (OMIM: 613844) cytochrome b-c1 complex su  (85 aa)
 initn: 443 init1: 443 opt: 443  Z-score: 472.6  bits: 91.9 E(85289): 1.4e-19
Smith-Waterman score: 443; 100.0% identity (100.0% similar) in 64 aa overlap (28-91:22-85)

               10        20        30        40        50        60
pF1KE6 MGLEDEQKMLTESGDPEEEEEEEEELVDPLTTVREQCEQLEKCVKARERLELCDERVSSR
                                  :::::::::::::::::::::::::::::::::
NP_001       MGDRILPFLAAVWLCQLAFCTDPLTTVREQCEQLEKCVKARERLELCDERVSSR
                     10        20        30        40        50    

               70        80        90 
pF1KE6 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
       :::::::::::::::::::::::::::::::
NP_001 SHTEEDCTEELFDFLHARDHCVAHKLFNNLK
           60        70        80     




91 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:04:51 2016 done: Tue Nov  8 10:04:51 2016
 Total Scan time:  3.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]