Result of FASTA (ccds) for
pFN21AE6167
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6167, 134 aa
1>>>pF1KE6167 134 - 134 aa - 134 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4258+/-0.000739; mu= 9.8782+/- 0.044
mean_var=56.5394+/-11.671, 0's: 0 Z-trim(107.0): 23 B-trim: 0 in 0/51
Lambda= 0.170568
statistics sampled from 9286 (9307) to 9286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.286), width: 16
Scan time: 1.310
The best scores are: opt bits E(32554)
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 927 235.9 5.6e-63
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 562 146.1 8.8e-36
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 556 144.6 1.7e-35
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 485 127.1 3.1e-30
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 319 86.3 6.1e-18
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 314 85.1 1.5e-17
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 312 84.6 2.3e-17
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 309 83.9 3.9e-17
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 307 83.3 4.7e-17
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 307 83.3 4.7e-17
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 306 83.1 5.8e-17
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 303 82.4 1.1e-16
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 301 81.9 1.3e-16
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 263 72.5 9e-14
>>CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 (134 aa)
initn: 927 init1: 927 opt: 927 Z-score: 1244.1 bits: 235.9 E(32554): 5.6e-63
Smith-Waterman score: 927; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
70 80 90 100 110 120
130
pF1KE6 FCEGQVCKQTFQRA
::::::::::::::
CCDS10 FCEGQVCKQTFQRA
130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 589 init1: 562 opt: 562 Z-score: 755.9 bits: 146.1 E(32554): 8.8e-36
Smith-Waterman score: 562; 57.1% identity (82.7% similar) in 133 aa overlap (1-133:63-195)
10 20 30
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFAT
::.:..: : .: ..::: :. :: .. :
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWD
::::.::::.: : :.:: . :.: :..:::.. :.::.::.:: :.:.::: . : ::
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
100 110 120 130 140 150
100 110 120 130
pF1KE6 NDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQRA
.:.: :.:::::..::::.:::::.::::: :: ::::.:..
CCDS31 GDKLQCVQKGEKEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 (134 aa)
initn: 558 init1: 545 opt: 556 Z-score: 750.7 bits: 144.6 E(32554): 1.7e-35
Smith-Waterman score: 556; 59.4% identity (80.5% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
: : .::: . :..:::::: :: ::::::::: : :::.:.::.: .:.:..::
CCDS31 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
: : : :: :::: ...::::. :.:: :..: :.:.:::::.:::: .:::::::.::.
CCDS31 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVCVQKGEKENRGWKQWIEGDKLYLEL
70 80 90 100 110 120
130
pF1KE6 FCEGQVCKQTFQRA
: :::.:.:..
CCDS31 TCGDQVCRQVFKKK
130
>>CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 (135 aa)
initn: 498 init1: 485 opt: 485 Z-score: 656.2 bits: 127.1 E(32554): 3.1e-30
Smith-Waterman score: 485; 49.6% identity (82.7% similar) in 133 aa overlap (1-133:1-133)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
:: .:.: . ..:. :.: :. ::.:..:.:::: ::::.: ::..:. .:..: :..::
CCDS85 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
: :.: :: ::.:: :..:.:::...: :....:.:.:::: :::: ::.::. :.::.
CCDS85 YTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVCVQKGEVPNRGWRHWLEGEMLYLEL
70 80 90 100 110 120
130
pF1KE6 FCEGQVCKQTFQRA
. ::.:.:..
CCDS85 TARDAVCEQVFRKVR
130
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 338 init1: 250 opt: 319 Z-score: 435.6 bits: 86.3 E(32554): 6.1e-18
Smith-Waterman score: 319; 39.4% identity (70.1% similar) in 127 aa overlap (7-133:7-131)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
::: :..: ::. :: .::. ::::..:.. :: .::.::: .:..:.:...:
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
..::.: :::: . :.:: ::.: :. .:. .:: . .. .. . :: : .
CCDS34 TEISFKLGVEFDETT--ADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTL
70 80 90 100 110
130
pF1KE6 FCEGQVCKQTFQRA
:: .:...
CCDS34 THGTAVCTRTYEKEA
120 130
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 296 init1: 147 opt: 314 Z-score: 428.7 bits: 85.1 E(32554): 1.5e-17
Smith-Waterman score: 314; 39.3% identity (69.3% similar) in 140 aa overlap (1-133:1-137)
10 20 30 40 50
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIA--KLLKPQKVIEQNGDSFTIHTNSSL
:: ..::.: .. :.::: . .::.. :::: :: :.:.::.: :.:....
CCDS11 MP-NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDND-RLTCIQK---GEKKNRGWTHWIEGD
:. ..:::::::.:.. .:.: ::::: :... ...: :: :: . .::. . .:
CCDS11 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
60 70 80 90 100 110
120 130
pF1KE6 -KLHLEMFCEGQVCKQTFQRA
.: : : . :: ... :
CCDS11 GELILTMTADDVVCTRVYVRE
120 130
>>CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 (153 aa)
initn: 325 init1: 312 opt: 312 Z-score: 425.3 bits: 84.6 E(32554): 2.3e-17
Smith-Waterman score: 312; 52.9% identity (80.0% similar) in 85 aa overlap (1-85:63-147)
10 20 30
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFAT
::.:..: : .: ..::: :. :: .. :
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWD
::::.::::.: : :.:: . :.: :..:::.. :.::.::.:: :.:.::: :
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMSETGFS
100 110 120 130 140 150
100 110 120 130
pF1KE6 NDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQRA
CCDS46 S
>>CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 (157 aa)
initn: 309 init1: 309 opt: 309 Z-score: 421.1 bits: 83.9 E(32554): 3.9e-17
Smith-Waterman score: 309; 53.0% identity (80.7% similar) in 83 aa overlap (1-83:63-145)
10 20 30
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFAT
::.:..: : .: ..::: :. :: .. :
CCDS46 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWD
::::.::::.: : :.:: . :.: :..:::.. :.::.::.:: :.:.:::
CCDS46 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMAGVQSR
100 110 120 130 140 150
100 110 120 130
pF1KE6 NDRLTCIQKGEKKNRGWTHWIEGDKLHLEMFCEGQVCKQTFQRA
CCDS46 DLSSL
>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa)
initn: 313 init1: 236 opt: 307 Z-score: 419.7 bits: 83.3 E(32554): 4.7e-17
Smith-Waterman score: 307; 39.8% identity (68.0% similar) in 128 aa overlap (7-134:7-132)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
::: :.::.::. :: .:. :::::.: . ::. .: ::: .::...:...:
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
..: .:.:::: . :.:: :: . :. :. .:: . :. . : ::: .:
CCDS62 TEISFILGQEFDEVTA--DDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
70 80 90 100 110
130
pF1KE6 FCEGQVCKQTFQRA
.: . ....::
CCDS62 VMKGVTSTRVYERA
120 130
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 307 init1: 225 opt: 307 Z-score: 419.7 bits: 83.3 E(32554): 4.7e-17
Smith-Waterman score: 307; 37.3% identity (70.1% similar) in 134 aa overlap (1-134:1-132)
10 20 30 40 50 60
pF1KE6 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIHTNSSLRN
: . .:: : .:.::. :: :::. ::::..... :: .: :.::. .:.: :...:
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YFVKFKVGEEFDEDNRGLDNRKCKSLVIWDNDRLTCIQKGEKKNRGWTHWIEGDKLHLEM
..:..:::::: . :.:.:::.: :.:.:. ::: . :. .... :. :. . .
CCDS51 TEISFQLGEEFDETT--ADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
70 80 90 100 110
130
pF1KE6 FCEGQVCKQTFQRA
: . ...:
CCDS51 TFGDVVAVRHYEKA
120 130
134 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:01:12 2016 done: Tue Nov 8 10:01:12 2016
Total Scan time: 1.310 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]