Result of FASTA (omim) for
pFN21AE6164
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6164, 89 aa
1>>>pF1KE6164 89 - 89 aa - 89 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9306+/-0.0003; mu= 10.4890+/- 0.019
mean_var=56.0819+/-11.296, 0's: 0 Z-trim(116.8): 16 B-trim: 705 in 1/54
Lambda= 0.171263
statistics sampled from 28305 (28321) to 28305 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.332), width: 16
Scan time: 3.020
The best scores are: opt bits E(85289)
NP_001291414 (OMIM: 607384) mitochondrial import i ( 89) 597 154.8 1.7e-38
NP_036592 (OMIM: 607384) mitochondrial import inne ( 89) 597 154.8 1.7e-38
NP_001291416 (OMIM: 607384) mitochondrial import i ( 89) 597 154.8 1.7e-38
NP_001291415 (OMIM: 607384) mitochondrial import i ( 89) 597 154.8 1.7e-38
NP_001291420 (OMIM: 607384) mitochondrial import i ( 60) 301 81.6 1.2e-16
NP_001291419 (OMIM: 607384) mitochondrial import i ( 60) 301 81.6 1.2e-16
NP_001291418 (OMIM: 607384) mitochondrial import i ( 61) 301 81.6 1.3e-16
NP_001291417 (OMIM: 607384) mitochondrial import i ( 66) 301 81.6 1.3e-16
NP_036324 (OMIM: 607388) mitochondrial import inne ( 103) 147 43.7 5.6e-05
NP_036588 (OMIM: 602251) mitochondrial import inne ( 90) 124 38.0 0.0026
>>NP_001291414 (OMIM: 607384) mitochondrial import inner (89 aa)
initn: 597 init1: 597 opt: 597 Z-score: 812.2 bits: 154.8 E(85289): 1.7e-38
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
10 20 30 40 50 60
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::::::::::::::::
NP_001 QRISMRFQEYHIQQNEALAAKAGLLGQPR
70 80
>>NP_036592 (OMIM: 607384) mitochondrial import inner me (89 aa)
initn: 597 init1: 597 opt: 597 Z-score: 812.2 bits: 154.8 E(85289): 1.7e-38
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
10 20 30 40 50 60
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::::::::::::::::
NP_036 QRISMRFQEYHIQQNEALAAKAGLLGQPR
70 80
>>NP_001291416 (OMIM: 607384) mitochondrial import inner (89 aa)
initn: 597 init1: 597 opt: 597 Z-score: 812.2 bits: 154.8 E(85289): 1.7e-38
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
10 20 30 40 50 60
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::::::::::::::::
NP_001 QRISMRFQEYHIQQNEALAAKAGLLGQPR
70 80
>>NP_001291415 (OMIM: 607384) mitochondrial import inner (89 aa)
initn: 597 init1: 597 opt: 597 Z-score: 812.2 bits: 154.8 E(85289): 1.7e-38
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
10 20 30 40 50 60
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::::::::::::::::
NP_001 QRISMRFQEYHIQQNEALAAKAGLLGQPR
70 80
>>NP_001291420 (OMIM: 607384) mitochondrial import inner (60 aa)
initn: 301 init1: 301 opt: 301 Z-score: 419.6 bits: 81.6 E(85289): 1.2e-16
Smith-Waterman score: 327; 67.4% identity (67.4% similar) in 89 aa overlap (1-89:1-60)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEE---------------
10 20 30 40
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::
NP_001 --------------NEALAAKAGLLGQPR
50 60
>>NP_001291419 (OMIM: 607384) mitochondrial import inner (60 aa)
initn: 301 init1: 301 opt: 301 Z-score: 419.6 bits: 81.6 E(85289): 1.2e-16
Smith-Waterman score: 327; 67.4% identity (67.4% similar) in 89 aa overlap (1-89:1-60)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEE---------------
10 20 30 40
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::
NP_001 --------------NEALAAKAGLLGQPR
50 60
>>NP_001291418 (OMIM: 607384) mitochondrial import inner (61 aa)
initn: 301 init1: 301 opt: 301 Z-score: 419.5 bits: 81.6 E(85289): 1.3e-16
Smith-Waterman score: 336; 68.5% identity (68.5% similar) in 89 aa overlap (1-89:1-61)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEE---------------
10 20 30 40
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
::::::::::::::::
NP_001 -------------QNEALAAKAGLLGQPR
50 60
>>NP_001291417 (OMIM: 607384) mitochondrial import inner (66 aa)
initn: 301 init1: 301 opt: 301 Z-score: 418.9 bits: 81.6 E(85289): 1.3e-16
Smith-Waterman score: 382; 74.2% identity (74.2% similar) in 89 aa overlap (1-89:1-66)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEE---------------
10 20 30 40
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
:::::::::::::::::::::
NP_001 --------EYHIQQNEALAAKAGLLGQPR
50 60
>>NP_036324 (OMIM: 607388) mitochondrial import inner me (103 aa)
initn: 134 init1: 120 opt: 147 Z-score: 210.4 bits: 43.7 E(85289): 5.6e-05
Smith-Waterman score: 147; 31.7% identity (66.7% similar) in 63 aa overlap (1-63:1-63)
10 20 30 40 50 60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
: : ...:......:: .::..:: :: :: .. : . :: .: . : : .. .
NP_036 MERQQQQQQQLRNLRDFLLVYNRMTELCFQRCVPSLHHRALDAEEEACLHSCAGKLIHSN
10 20 30 40 50 60
70 80
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
.:.
NP_036 HRLMAAYVQLMPALVQRRIADYEAASAVPGVAAEQPGVSPSGS
70 80 90 100
>>NP_036588 (OMIM: 602251) mitochondrial import inner me (90 aa)
initn: 94 init1: 51 opt: 124 Z-score: 180.5 bits: 38.0 E(85289): 0.0026
Smith-Waterman score: 124; 28.8% identity (66.1% similar) in 59 aa overlap (21-78:22-80)
10 20 30 40 50
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKD-FTTREVKPEETTCSEHCLQKYLK
::..: .: :: . :.. :..: ..:..:::
NP_036 MDPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLD
10 20 30 40 50 60
60 70 80
pF1KE6 MTQRISMRFQEYHIQQNEALAAKAGLLGQPR
. .:.. .. : .:..: .
NP_036 IHERMGKKLTELSMQDEELMKRVQQSSGPA
70 80 90
89 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:59:47 2016 done: Tue Nov 8 09:59:48 2016
Total Scan time: 3.020 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]