FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6164, 89 aa
  1>>>pF1KE6164 89 - 89 aa - 89 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1846+/-0.000617; mu= 8.8807+/- 0.037
 mean_var=55.3233+/-10.796, 0's: 0 Z-trim(110.3): 7  B-trim: 0 in 0/52
 Lambda= 0.172433
 statistics sampled from 11506 (11511) to 11506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.050

The best scores are:                                      opt bits E(32554)
CCDS9735.1 TIMM9 gene_id:26520|Hs108|chr14         (  89)  597 155.8 3.2e-39
CCDS76685.1 TIMM9 gene_id:26520|Hs108|chr14        (  66)  301 82.1 3.6e-17


>>CCDS9735.1 TIMM9 gene_id:26520|Hs108|chr14              (89 aa)
 initn: 597 init1: 597 opt: 597  Z-score: 817.5  bits: 155.8 E(32554): 3.2e-39
Smith-Waterman score: 597; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
               10        20        30        40        50        60

               70        80         
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
       :::::::::::::::::::::::::::::
CCDS97 QRISMRFQEYHIQQNEALAAKAGLLGQPR
               70        80         

>>CCDS76685.1 TIMM9 gene_id:26520|Hs108|chr14             (66 aa)
 initn: 301 init1: 301 opt: 301  Z-score: 421.6  bits: 82.1 E(32554): 3.6e-17
Smith-Waterman score: 382; 74.2% identity (74.2% similar) in 89 aa overlap (1-89:1-66)

               10        20        30        40        50        60
pF1KE6 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS76 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEE---------------
               10        20        30        40                    

               70        80         
pF1KE6 QRISMRFQEYHIQQNEALAAKAGLLGQPR
               :::::::::::::::::::::
CCDS76 --------EYHIQQNEALAAKAGLLGQPR
                  50        60      




89 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:59:47 2016 done: Tue Nov  8 09:59:47 2016
 Total Scan time:  1.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]