FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6158, 120 aa
  1>>>pF1KE6158 120 - 120 aa - 120 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2360+/-0.000605; mu= 12.2784+/- 0.037
 mean_var=75.9708+/-14.886, 0's: 0 Z-trim(113.3): 10  B-trim: 0 in 0/52
 Lambda= 0.147147
 statistics sampled from 13950 (13959) to 13950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.429), width:  16
 Scan time:  1.460

The best scores are:                                      opt bits E(32554)
CCDS35355.1 BEX4 gene_id:56271|Hs108|chrX          ( 120)  840 186.3   4e-48
CCDS14508.1 BEX3 gene_id:27018|Hs108|chrX          ( 111)  371 86.7 3.5e-18
CCDS14509.1 BEX3 gene_id:27018|Hs108|chrX          ( 101)  344 80.9 1.7e-16
CCDS35350.1 BEX5 gene_id:340542|Hs108|chrX         ( 111)  279 67.1 2.7e-12
CCDS35354.1 BEX1 gene_id:55859|Hs108|chrX          ( 125)  270 65.3 1.1e-11


>>CCDS35355.1 BEX4 gene_id:56271|Hs108|chrX               (120 aa)
 initn: 840 init1: 840 opt: 840  Z-score: 977.5  bits: 186.3 E(32554): 4e-48
Smith-Waterman score: 840; 100.0% identity (100.0% similar) in 120 aa overlap (1-120:1-120)

               10        20        30        40        50        60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 NFRWAIPNRHIEHNEARDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYDFCLIP
               70        80        90       100       110       120

>>CCDS14508.1 BEX3 gene_id:27018|Hs108|chrX               (111 aa)
 initn: 394 init1: 131 opt: 371  Z-score: 439.9  bits: 86.7 E(32554): 3.5e-18
Smith-Waterman score: 371; 55.0% identity (75.7% similar) in 111 aa overlap (16-120:3-111)

               10        20        30        40        50        60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
                      : .::::  :: : :: ::.: ::::::..:.:: :::..:::.:
CCDS14              MANIHQENEEMEQ-PMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
                            10         20        30         40     

               70          80        90       100       110        
pF1KE6 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
       :::::::::.:. . . :  :.: :. .: ::.:: :: :.:. .:.   : .::.:   
CCDS14 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
          50        60        70        80        90       100     

          120
pF1KE6 -FCLIP
        :::.:
CCDS14 EFCLMP
         110 

>>CCDS14509.1 BEX3 gene_id:27018|Hs108|chrX               (101 aa)
 initn: 347 init1: 131 opt: 344  Z-score: 409.5  bits: 80.9 E(32554): 1.7e-16
Smith-Waterman score: 344; 53.5% identity (76.2% similar) in 101 aa overlap (26-120:2-101)

               10        20        30        40        50        60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
                                . : :: ::.: ::::::..:.:: :::..:::.:
CCDS14                         MEQPMQNGEEDRPLGGGEGHQPAGN-RRGQARRLAP
                                       10        20         30     

               70          80        90       100       110        
pF1KE6 NFRWAIPNRHIEHNEARD--DVERFVGQMMEIKRKTREQQMRHYMRFQTPEPDNHYD---
       :::::::::.:. . . :  :.: :. .: ::.:: :: :.:. .:.   : .::.:   
CCDS14 NFRWAIPNRQINDGMGGDGDDMEIFMEEMREIRRKLRELQLRNCLRILMGELSNHHDHHD
          40        50        60        70        80        90     

          120
pF1KE6 -FCLIP
        :::.:
CCDS14 EFCLMP
         100 

>>CCDS35350.1 BEX5 gene_id:340542|Hs108|chrX              (111 aa)
 initn: 256 init1: 104 opt: 279  Z-score: 334.3  bits: 67.1 E(32554): 2.7e-12
Smith-Waterman score: 279; 41.6% identity (67.3% similar) in 113 aa overlap (15-120:2-111)

               10        20        30        40        50        60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
                     ::. .::.  :.::.:::  .  ::::: :.::::.. :     .:
CCDS35              MENVPKENKVVEKAPVQNEAPA--LGGGEYQEPGGNVK-GVWAPPAP
                            10        20          30         40    

               70            80        90       100       110      
pF1KE6 NFRWAIPNRHIEHNEA----RDDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---DNH
       .:   .::: ... .      ::.:::. .: :..:: :: :.:. .:.   .:   :.:
CCDS35 GFGEDVPNRLVDNIDMIDGDGDDMERFMEEMRELRRKIRELQLRYSLRILIGDPPHHDHH
           50        60        70        80        90       100    

           120
pF1KE6 YDFCLIP
        .:::.:
CCDS35 DEFCLMP
          110 

>>CCDS35354.1 BEX1 gene_id:55859|Hs108|chrX               (125 aa)
 initn: 308 init1: 179 opt: 270  Z-score: 323.3  bits: 65.3 E(32554): 1.1e-11
Smith-Waterman score: 270; 38.9% identity (68.3% similar) in 126 aa overlap (1-120:1-125)

               10        20        30        40        50        60
pF1KE6 MESKEELAANNLNGENAQQENEGGEQAPTQNEEESRHLGGGEGQKPGGNIRRGRVRRLVP
       :::::. :.:.:. :::.::::  ::. ...:  .  : .::   : :: :: :::. . 
CCDS35 MESKEKRAVNSLSMENANQENEEKEQVANKGEPLALPLDAGEYCVPRGNRRRFRVRQPIL
               10        20        30        40        50        60

               70           80        90       100       110       
pF1KE6 NFRWAIPNRHIEHNEAR---DDVERFVGQMMEIKRKTREQQMRHYMRFQTPEP---DNHY
       ..:: . .: . . .::   ...::.  .. .. .: ::.:. : .:  . .:   :.: 
CCDS35 QYRWDMMHR-LGEPQARMREENMERIGEEVRQLMEKLREKQLSHSLRAVSTDPPHHDHHD
                70        80        90       100       110         

          120
pF1KE6 DFCLIP
       .:::.:
CCDS35 EFCLMP
     120     




120 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:57:24 2016 done: Tue Nov  8 09:57:25 2016
 Total Scan time:  1.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]