FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6157, 72 aa
  1>>>pF1KE6157 72 - 72 aa - 72 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3164+/-0.000512; mu= 6.7616+/- 0.031
 mean_var=53.8148+/-10.584, 0's: 0 Z-trim(112.9): 10  B-trim: 0 in 0/52
 Lambda= 0.174833
 statistics sampled from 13577 (13587) to 13577 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.417), width:  16
 Scan time:  1.040

The best scores are:                                      opt bits E(32554)
CCDS35295.1 SPANXN5 gene_id:494197|Hs108|chrX      (  72)  469 125.3 3.2e-30
CCDS35421.1 SPANXN1 gene_id:494118|Hs108|chrX      (  72)  416 111.9 3.4e-26
CCDS35419.1 SPANXN2 gene_id:494119|Hs108|chrX      ( 180)  312 85.8 6.3e-18
CCDS35418.1 SPANXN3 gene_id:139067|Hs108|chrX      ( 141)  309 85.0 8.5e-18


>>CCDS35295.1 SPANXN5 gene_id:494197|Hs108|chrX           (72 aa)
 initn: 469 init1: 469 opt: 469  Z-score: 655.9  bits: 125.3 E(32554): 3.2e-30
Smith-Waterman score: 469; 100.0% identity (100.0% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
pF1KE6 MEKPTSSTNGEKRKSPCDSNSKNDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MEKPTSSTNGEKRKSPCDSNSKNDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKTK
               10        20        30        40        50        60

               70  
pF1KE6 KIHSNQLENDQS
       ::::::::::::
CCDS35 KIHSNQLENDQS
               70  

>>CCDS35421.1 SPANXN1 gene_id:494118|Hs108|chrX           (72 aa)
 initn: 416 init1: 416 opt: 416  Z-score: 583.7  bits: 111.9 E(32554): 3.4e-26
Smith-Waterman score: 416; 86.1% identity (97.2% similar) in 72 aa overlap (1-72:1-72)

               10        20        30        40        50        60
pF1KE6 MEKPTSSTNGEKRKSPCDSNSKNDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKTK
       ::.:::: :::::::::.::..::::::::::::. ::::::::::::::::..::::.:
CCDS35 MEQPTSSINGEKRKSPCESNNENDEMQETPNRDLAPEPSLKKMKTSEYSTVLAFCYRKAK
               10        20        30        40        50        60

               70  
pF1KE6 KIHSNQLENDQS
       ::::::::::::
CCDS35 KIHSNQLENDQS
               70  

>>CCDS35419.1 SPANXN2 gene_id:494119|Hs108|chrX           (180 aa)
 initn: 204 init1: 204 opt: 312  Z-score: 435.3  bits: 85.8 E(32554): 6.3e-18
Smith-Waterman score: 312; 69.9% identity (84.9% similar) in 73 aa overlap (1-72:1-73)

               10        20         30        40        50         
pF1KE6 MEKPTSSTNGEKRKSPCDSNSK-NDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKT
       ::.::::::::::::::.::.: ::::::.::: :. . ::.: :: :: :..:  ::: 
CCDS35 MEQPTSSTNGEKRKSPCESNNKKNDEMQEAPNRVLAPKQSLQKTKTIEYLTIIVYYYRKH
               10        20        30        40        50        60

      60        70                                                 
pF1KE6 KKIHSNQLENDQS                                               
        ::.:::::.:::                                               
CCDS35 TKINSNQLEKDQSRENSINPVQEEEDEGLDSAEGSSQEDEDLDSSEGSSQEDEDLDSSEG
               70        80        90       100       110       120

>>CCDS35418.1 SPANXN3 gene_id:139067|Hs108|chrX           (141 aa)
 initn: 209 init1: 209 opt: 309  Z-score: 433.0  bits: 85.0 E(32554): 8.5e-18
Smith-Waterman score: 309; 69.9% identity (83.6% similar) in 73 aa overlap (1-72:1-73)

               10        20         30        40        50         
pF1KE6 MEKPTSSTNGEKRKSPCDSNSK-NDEMQETPNRDLVLEPSLKKMKTSEYSTVLVLCYRKT
       ::.::::::::: ::::.::.: ::::::.::: :. : :::. :::::  ..:   :: 
CCDS35 MEQPTSSTNGEKTKSPCESNNKKNDEMQEVPNRVLAPEQSLKNTKTSEYPIIFVYYLRKG
               10        20        30        40        50        60

      60        70                                                 
pF1KE6 KKIHSNQLENDQS                                               
       :::.::::::.::                                               
CCDS35 KKINSNQLENEQSQENSINPIQKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDLDSSEG
               70        80        90       100       110       120




72 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:56:49 2016 done: Tue Nov  8 09:56:49 2016
 Total Scan time:  1.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]