FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6154, 78 aa
  1>>>pF1KE6154 78 - 78 aa - 78 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5994+/-0.00083; mu= 11.2271+/- 0.050
 mean_var=48.8793+/- 9.772, 0's: 0 Z-trim(104.7): 9  B-trim: 0 in 0/49
 Lambda= 0.183447
 statistics sampled from 8014 (8020) to 8014 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.246), width:  16
 Scan time:  0.770

The best scores are:                                      opt bits E(32554)
CCDS47138.1 GYPE gene_id:2996|Hs108|chr4           (  78)  476 133.1 1.7e-32
CCDS54809.1 GYPB gene_id:2994|Hs108|chr4           (  91)  276 80.2 1.6e-16
CCDS77965.1 GYPA gene_id:2993|Hs108|chr4           ( 137)  228 67.6 1.5e-12
CCDS34069.1 GYPA gene_id:2993|Hs108|chr4           ( 150)  228 67.6 1.7e-12


>>CCDS47138.1 GYPE gene_id:2996|Hs108|chr4                (78 aa)
 initn: 476 init1: 476 opt: 476  Z-score: 697.0  bits: 133.1 E(32554): 1.7e-32
Smith-Waterman score: 476; 100.0% identity (100.0% similar) in 78 aa overlap (1-78:1-78)

               10        20        30        40        50        60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
               10        20        30        40        50        60

               70        
pF1KE6 EVMLVVVGMIILISYCIR
       ::::::::::::::::::
CCDS47 EVMLVVVGMIILISYCIR
               70        

>>CCDS54809.1 GYPB gene_id:2994|Hs108|chr4                (91 aa)
 initn: 298 init1: 237 opt: 276  Z-score: 410.0  bits: 80.2 E(32554): 1.6e-16
Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-78:1-86)

               10        20        30        40          50        
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWAMAR-
       :::::::::::: :::::: ::: :::::::::::::::::::::: :  :.. ...   
CCDS54 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP
               10        20        30        40        50        60

             60        70             
pF1KE6 -----VIFEVMLVVVGMIILISYCIR     
            .:. ::  ..: :.:::: ::     
CCDS54 VVIILIILCVMAGIIGTILLISYSIRRLIKA
               70        80        90 

>>CCDS77965.1 GYPA gene_id:2993|Hs108|chr4                (137 aa)
 initn: 289 init1: 228 opt: 228  Z-score: 338.6  bits: 67.6 E(32554): 1.5e-12
Smith-Waterman score: 239; 54.9% identity (61.8% similar) in 102 aa overlap (1-78:1-102)

               10        20        30        40        50          
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWA------
       :::::::::::: :::::: ::: :::::::::::::::::::::     . .:      
CCDS77 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
               10        20        30        40        50        60

                             60        70                          
pF1KE6 ------------------MARVIFEVMLVVVGMIILISYCIR                  
                         .. .:: ::  :.: :.:::: ::                  
CCDS77 EVSEISVRTVYPPEEETEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDT
               70        80        90       100       110       120

CCDS77 DVPLSSVEIENPETSDQ
              130       

>>CCDS34069.1 GYPA gene_id:2993|Hs108|chr4                (150 aa)
 initn: 289 init1: 228 opt: 228  Z-score: 338.0  bits: 67.6 E(32554): 1.7e-12
Smith-Waterman score: 228; 93.3% identity (93.3% similar) in 45 aa overlap (1-45:1-45)

               10        20        30        40        50        60
pF1KE6 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGITLINWWAMARVIF
       :::::::::::: :::::: ::: :::::::::::::::::::::               
CCDS34 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH
               10        20        30        40        50        60

               70                                                  
pF1KE6 EVMLVVVGMIILISYCIR                                          
                                                                   
CCDS34 EVSEISVRTVYPPEEETGERVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRLIKK
               70        80        90       100       110       120




78 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:55:19 2016 done: Tue Nov  8 09:55:19 2016
 Total Scan time:  0.770 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]