FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6151, 97 aa
  1>>>pF1KE6151 97 - 97 aa - 97 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7737+/-0.000478; mu= 12.5898+/- 0.029
 mean_var=58.3835+/-11.887, 0's: 0 Z-trim(115.6): 9  B-trim: 820 in 1/50
 Lambda= 0.167853
 statistics sampled from 16174 (16183) to 16174 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.497), width:  16
 Scan time:  1.310

The best scores are:                                      opt bits E(32554)
CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16        (  97)  699 176.0 3.3e-45
CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12         ( 109)  388 100.7 1.7e-22


>>CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16             (97 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 925.2  bits: 176.0 E(32554): 3.3e-45
Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97)

               10        20        30        40        50        60
pF1KE6 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR
               10        20        30        40        50        60

               70        80        90       
pF1KE6 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
       :::::::::::::::::::::::::::::::::::::
CCDS10 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
               70        80        90       

>>CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12              (109 aa)
 initn: 292 init1: 282 opt: 388  Z-score: 517.5  bits: 100.7 E(32554): 1.7e-22
Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (6-95:17-107)

                           10        20        30        40        
pF1KE6            MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY
                       :: : : ..:.:.: .:.  :: :. ::: .:::.::.  .: :
CCDS91 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGS--ARMWKTLTFFVALPGVAVSMLNVY
               10        20        30          40        50        

         50        60        70        80        90       
pF1KE6 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
       :  : :.. ::::  : ::::::::.:::::::::::: ::::::::::  
CCDS91 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE
       60        70        80        90       100         




97 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:53:58 2016 done: Tue Nov  8 09:53:58 2016
 Total Scan time:  1.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]