FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6149, 145 aa
  1>>>pF1KE6149 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8416+/-0.000267; mu= 6.7219+/- 0.017
 mean_var=128.4144+/-26.189, 0's: 0 Z-trim(122.9): 2  B-trim: 0 in 0/58
 Lambda= 0.113179
 statistics sampled from 41849 (41851) to 41849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.491), width:  16
 Scan time:  4.070

The best scores are:                                      opt bits E(85289)
NP_079088 (OMIM: 606602) brain and acute leukemia  ( 145)  997 172.4 2.3e-43
NP_001019543 (OMIM: 606602) brain and acute leukem (  54)  383 71.8 1.6e-13


>>NP_079088 (OMIM: 606602) brain and acute leukemia cyto  (145 aa)
 initn: 997 init1: 997 opt: 997  Z-score: 899.4  bits: 172.4 E(85289): 2.3e-43
Smith-Waterman score: 997; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK
               70        80        90       100       110       120

              130       140     
pF1KE6 EVTINVTDSIQQMDRSRRITKNCVN
       :::::::::::::::::::::::::
NP_079 EVTINVTDSIQQMDRSRRITKNCVN
              130       140     

>>NP_001019543 (OMIM: 606602) brain and acute leukemia c  (54 aa)
 initn: 383 init1: 383 opt: 383  Z-score: 363.5  bits: 71.8 E(85289): 1.6e-13
Smith-Waterman score: 383; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:1-54)

               10        20        30        40        50        60
pF1KE6 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
NP_001 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSG      
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE6 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK




145 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:52:53 2016 done: Tue Nov  8 09:52:53 2016
 Total Scan time:  4.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]