FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6149, 145 aa
  1>>>pF1KE6149 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7771+/-0.000648; mu= 7.0986+/- 0.039
 mean_var=124.9872+/-25.177, 0's: 0 Z-trim(115.7): 4  B-trim: 0 in 0/52
 Lambda= 0.114721
 statistics sampled from 16284 (16286) to 16284 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.5), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS6297.1 BAALC gene_id:79870|Hs108|chr8          ( 145)  997 174.4 2.1e-44
CCDS47906.1 BAALC gene_id:79870|Hs108|chr8         (  54)  383 72.5 3.8e-14


>>CCDS6297.1 BAALC gene_id:79870|Hs108|chr8               (145 aa)
 initn: 997 init1: 997 opt: 997  Z-score: 910.7  bits: 174.4 E(32554): 2.1e-44
Smith-Waterman score: 997; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KE6 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK
               70        80        90       100       110       120

              130       140     
pF1KE6 EVTINVTDSIQQMDRSRRITKNCVN
       :::::::::::::::::::::::::
CCDS62 EVTINVTDSIQQMDRSRRITKNCVN
              130       140     

>>CCDS47906.1 BAALC gene_id:79870|Hs108|chr8              (54 aa)
 initn: 383 init1: 383 opt: 383  Z-score: 367.5  bits: 72.5 E(32554): 3.8e-14
Smith-Waterman score: 383; 100.0% identity (100.0% similar) in 54 aa overlap (1-54:1-54)

               10        20        30        40        50        60
pF1KE6 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSGMLEDGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS47 MGCGGSRADAIEPRYYESWTRETESTWLTYTDSDAPPSAAAPDSGPEAGGLHSG      
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE6 PSNGVPRSTAPGGIPNPEKKTNCETQCPNPQSLSSGPLTQKQNGLQTTEAKRDAKRMPAK




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:52:52 2016 done: Tue Nov  8 09:52:53 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]