FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6146, 98 aa
  1>>>pF1KE6146 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8292+/-0.000295; mu= 11.3969+/- 0.018
 mean_var=52.2952+/-10.709, 0's: 0 Z-trim(117.2): 10  B-trim: 31 in 2/53
 Lambda= 0.177355
 statistics sampled from 29001 (29011) to 29001 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(85289)
XP_011509532 (OMIM: 252010,603839) PREDICTED: NADH (  98)  701 186.4 6.3e-48
NP_002482 (OMIM: 252010,603839) NADH dehydrogenase (  98)  701 186.4 6.3e-48
NP_001244031 (OMIM: 252010,603839) NADH dehydrogen (  98)  701 186.4 6.3e-48
XP_016859675 (OMIM: 252010,603839) PREDICTED: NADH (  98)  701 186.4 6.3e-48


>>XP_011509532 (OMIM: 252010,603839) PREDICTED: NADH deh  (98 aa)
 initn: 701 init1: 701 opt: 701  Z-score: 981.4  bits: 186.4 E(85289): 6.3e-48
Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
               10        20        30        40        50        60

               70        80        90        
pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
       ::::::::::::::::::::::::::::::::::::::
XP_011 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
               70        80        90        

>>NP_002482 (OMIM: 252010,603839) NADH dehydrogenase [ub  (98 aa)
 initn: 701 init1: 701 opt: 701  Z-score: 981.4  bits: 186.4 E(85289): 6.3e-48
Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
               10        20        30        40        50        60

               70        80        90        
pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
       ::::::::::::::::::::::::::::::::::::::
NP_002 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
               70        80        90        

>>NP_001244031 (OMIM: 252010,603839) NADH dehydrogenase   (98 aa)
 initn: 701 init1: 701 opt: 701  Z-score: 981.4  bits: 186.4 E(85289): 6.3e-48
Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
               10        20        30        40        50        60

               70        80        90        
pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
       ::::::::::::::::::::::::::::::::::::::
NP_001 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
               70        80        90        

>>XP_016859675 (OMIM: 252010,603839) PREDICTED: NADH deh  (98 aa)
 initn: 701 init1: 701 opt: 701  Z-score: 981.4  bits: 186.4 E(85289): 6.3e-48
Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS
               10        20        30        40        50        60

               70        80        90        
pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
       ::::::::::::::::::::::::::::::::::::::
XP_016 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH
               70        80        90        




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:51:26 2016 done: Tue Nov  8 09:51:26 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]