FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6142, 109 aa
  1>>>pF1KE6142 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9272+/-0.000554; mu= 11.8293+/- 0.034
 mean_var=55.3830+/-11.067, 0's: 0 Z-trim(112.5): 7  B-trim: 0 in 0/52
 Lambda= 0.172340
 statistics sampled from 13260 (13266) to 13260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.408), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12         ( 109)  762 196.4 2.8e-51
CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16        (  97)  388 103.4 2.5e-23


>>CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12              (109 aa)
 initn: 762 init1: 762 opt: 762  Z-score: 1034.0  bits: 196.4 E(32554): 2.8e-51
Smith-Waterman score: 762; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK
               10        20        30        40        50        60

               70        80        90       100         
pF1KE6 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE
               70        80        90       100         

>>CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16             (97 aa)
 initn: 292 init1: 282 opt: 388  Z-score: 532.2  bits: 103.4 E(32554): 2.5e-23
Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (17-107:6-95)

               10        20        30          40        50        
pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSA--RMWKTLTFFVALPGVAVSMLNVY
                       :: : : ..:.:.: .:.:  : :. ::: .:::.::.  .: :
CCDS10            MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY
                           10        20        30        40        

       60        70        80        90       100         
pF1KE6 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE
       :  : :.. ::::  : ::::::::.:::::::::::: ::::::::::  
CCDS10 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP
         50        60        70        80        90       




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:49:44 2016 done: Tue Nov  8 09:49:44 2016
 Total Scan time:  1.260 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]