FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6141, 101 aa
  1>>>pF1KE6141 101 - 101 aa - 101 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4279+/-0.000326; mu= 13.1298+/- 0.020
 mean_var=50.8426+/-10.735, 0's: 0 Z-trim(114.7): 20  B-trim: 35 in 1/50
 Lambda= 0.179871
 statistics sampled from 24669 (24688) to 24669 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.289), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(85289)
NP_001268461 (OMIM: 607632,613736) gamma-secretase ( 101)  709 191.2 2.4e-49
NP_758844 (OMIM: 607632,613736) gamma-secretase su ( 101)  709 191.2 2.4e-49


>>NP_001268461 (OMIM: 607632,613736) gamma-secretase sub  (101 aa)
 initn: 709 init1: 709 opt: 709  Z-score: 1006.9  bits: 191.2 E(85289): 2.4e-49
Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KE6 MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRS
               10        20        30        40        50        60

               70        80        90       100 
pF1KE6 AVGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP
       :::::::::::::::::::::::::::::::::::::::::
NP_001 AVGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP
               70        80        90       100 

>>NP_758844 (OMIM: 607632,613736) gamma-secretase subuni  (101 aa)
 initn: 709 init1: 709 opt: 709  Z-score: 1006.9  bits: 191.2 E(85289): 2.4e-49
Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KE6 MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MNLERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWFFREAFLVPAYTEQSQIKGYVWRS
               10        20        30        40        50        60

               70        80        90       100 
pF1KE6 AVGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP
       :::::::::::::::::::::::::::::::::::::::::
NP_758 AVGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLGTP
               70        80        90       100 




101 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:49:13 2016 done: Tue Nov  8 09:49:14 2016
 Total Scan time:  3.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]