FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6138, 135 aa
  1>>>pF1KE6138 135 - 135 aa - 135 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5085+/-0.000738; mu= 10.4646+/- 0.045
 mean_var=66.3672+/-13.254, 0's: 0 Z-trim(108.6): 6  B-trim: 150 in 1/50
 Lambda= 0.157434
 statistics sampled from 10347 (10350) to 10347 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.318), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS10320.1 RPS17 gene_id:6218|Hs108|chr15         ( 135)  871 206.0   6e-54


>>CCDS10320.1 RPS17 gene_id:6218|Hs108|chr15              (135 aa)
 initn: 871 init1: 871 opt: 871  Z-score: 1082.1  bits: 206.0 E(32554): 6e-54
Smith-Waterman score: 871; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE6 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT
               70        80        90       100       110       120

              130     
pF1KE6 QPTVGMNFKTPRGPV
       :::::::::::::::
CCDS10 QPTVGMNFKTPRGPV
              130     




135 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:47:20 2016 done: Tue Nov  8 09:47:20 2016
 Total Scan time:  1.590 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]