FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6133, 51 aa
  1>>>pF1KE6133 51 - 51 aa - 51 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7449+/-0.000227; mu= 9.5484+/- 0.014
 mean_var=85.0197+/-16.283, 0's: 0 Z-trim(125.3): 58  B-trim: 0 in 0/55
 Lambda= 0.139096
 statistics sampled from 48612 (48688) to 48612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.571), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(85289)
NP_002752 (OMIM: 182880) sperm protamine P1 [Homo  (  51)  390 85.6 3.8e-18
NP_002753 (OMIM: 182890) protamine-2 isoform 1 [Ho ( 102)  166 41.0  0.0002


>>NP_002752 (OMIM: 182880) sperm protamine P1 [Homo sapi  (51 aa)
 initn: 390 init1: 390 opt: 390  Z-score: 446.7  bits: 85.6 E(85289): 3.8e-18
Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50 
pF1KE6 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MARYRCCRSQSRSRYYRQRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRRH
               10        20        30        40        50 

>>NP_002753 (OMIM: 182890) protamine-2 isoform 1 [Homo s  (102 aa)
 initn: 175 init1: 120 opt: 166  Z-score: 200.2  bits: 41.0 E(85289): 0.0002
Smith-Waterman score: 166; 52.0% identity (66.0% similar) in 50 aa overlap (3-51:54-102)

                                           10        20         30 
pF1KE6                             MARYRCCRSQSRSRYYRQRQRS-RRRRRRSCQ
                                     : : :  .   : .:...:: :::.::::.
NP_002 QEQGHHGQEEQGLSPEHVEVYERTHGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRRSCR
            30        40        50        60        70        80   

              40        50 
pF1KE6 TRRRAMRCCRPRYRPRCRRH
        :::  : :: : :  ::::
NP_002 HRRRHRRGCRTRKRT-CRRH
            90        100  




51 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:45:02 2016 done: Tue Nov  8 09:45:02 2016
 Total Scan time:  3.070 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]