Result of FASTA (omim) for
pFN21AE6127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6127, 138 aa
1>>>pF1KE6127 138 - 138 aa - 138 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5408+/-0.000369; mu= 9.5499+/- 0.023
mean_var=61.8001+/-12.403, 0's: 0 Z-trim(112.6): 27 B-trim: 0 in 0/52
Lambda= 0.163147
statistics sampled from 21550 (21577) to 21550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.253), width: 16
Scan time: 3.320
The best scores are: opt bits E(85289)
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138) 896 219.3 1.6e-57
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138) 896 219.3 1.6e-57
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138) 896 219.3 1.6e-57
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137) 702 173.6 9e-44
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197) 338 88.0 7.7e-18
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132) 335 87.2 8.7e-18
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133) 335 87.2 8.8e-18
NP_113679 (OMIM: 611866) retinol-binding protein 5 ( 135) 320 83.7 1e-16
NP_443192 (OMIM: 608604) retinoid-binding protein ( 134) 314 82.3 2.7e-16
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132) 309 81.1 6.1e-16
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166) 299 78.8 3.8e-15
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134) 286 75.7 2.6e-14
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126) 282 74.7 4.8e-14
NP_001435 (OMIM: 605168) fatty acid-binding protei ( 135) 280 74.3 7e-14
NP_001305971 (OMIM: 602965) fatty acid-binding pro ( 128) 267 71.2 5.6e-13
NP_001307925 (OMIM: 134651) fatty acid-binding pro ( 144) 261 69.8 1.7e-12
NP_001433 (OMIM: 600434) fatty acid-binding protei ( 132) 260 69.5 1.8e-12
XP_016875491 (OMIM: 611866) PREDICTED: retinol-bin ( 126) 259 69.3 2e-12
NP_001305970 (OMIM: 602965) fatty acid-binding pro ( 97) 248 66.7 9.6e-12
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153) 244 65.8 2.8e-11
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157) 243 65.6 3.4e-11
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132) 232 63.0 1.7e-10
NP_001316383 (OMIM: 611866) retinol-binding protei ( 86) 215 58.9 1.9e-09
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127) 184 51.7 4.2e-07
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128) 126 38.0 0.0055
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177) 126 38.1 0.0073
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177) 126 38.1 0.0073
>>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin (138 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1153.6 bits: 219.3 E(85289): 1.6e-57
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
130
pF1KE6 ILTMTADDVVCTRVYVRE
::::::::::::::::::
NP_001 ILTMTADDVVCTRVYVRE
130
>>NP_001186652 (OMIM: 180231) cellular retinoic acid-bin (138 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1153.6 bits: 219.3 E(85289): 1.6e-57
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
130
pF1KE6 ILTMTADDVVCTRVYVRE
::::::::::::::::::
NP_001 ILTMTADDVVCTRVYVRE
130
>>XP_016855832 (OMIM: 180231) PREDICTED: cellular retino (138 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1153.6 bits: 219.3 E(85289): 1.6e-57
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
70 80 90 100 110 120
130
pF1KE6 ILTMTADDVVCTRVYVRE
::::::::::::::::::
XP_016 ILTMTADDVVCTRVYVRE
130
>>NP_004369 (OMIM: 180230) cellular retinoic acid-bindin (137 aa)
initn: 604 init1: 604 opt: 702 Z-score: 906.9 bits: 173.6 E(85289): 9e-44
Smith-Waterman score: 702; 76.8% identity (90.6% similar) in 138 aa overlap (1-138:1-137)
10 20 30 40 50 60
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
::::.:.::. ::::.::::.::::.::::.:::::::: :::.:.:: ::::::::::
NP_004 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
:::::::::: :::.::::: :.::. ::.:::. : : ::.:.:::: :::::.:: ::
NP_004 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND-EL
70 80 90 100 110
130
pF1KE6 ILTMTADDVVCTRVYVRE
:::. ::::::::.::::
NP_004 ILTFGADDVVCTRIYVRE
120 130
>>NP_002890 (OMIM: 180260) retinol-binding protein 1 iso (197 aa)
initn: 290 init1: 129 opt: 338 Z-score: 441.3 bits: 88.0 E(85289): 7.7e-18
Smith-Waterman score: 338; 44.2% identity (67.4% similar) in 138 aa overlap (1-135:63-193)
10 20
pF1KE6 MP-NFSGNWKIIRSENFEELLKVLGVNVML
:: .:.: ::.. .::::: :..: ::: :
NP_002 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
30 40 50 60 70 80
pF1KE6 RKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQT--VDGRPCKSLVK
:::: :: :: :.:: . :.: .: :. ..:.::.::::. .: : : . :.
NP_002 RKIA--NLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVS
100 110 120 130 140 150
90 100 110 120 130
pF1KE6 WESENKMVCEQKLLKGEGPKTSWTRELTNDGELILTMTADDVVCTRVYVRE
:... :. : : ::: .::. . .: :: : : .. ::: .:.
NP_002 WDGD-KLQCVQ---KGEKEGRGWTQWIEGD-ELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b (132 aa)
initn: 318 init1: 179 opt: 335 Z-score: 440.3 bits: 87.2 E(85289): 8.7e-18
Smith-Waterman score: 335; 43.2% identity (75.0% similar) in 132 aa overlap (4-135:5-129)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: ..::. :.::.: .:.:::. :. :. ..::.: :.:::: :.: .:
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQ--VGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.:..::::.: :.: : :::.:. ... :.: :: .: .:...::. .::.
NP_001 KNTEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKW---DGKETNFVREI-KDGK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
...:.: ::: .: :
NP_001 MVMTLTFGDVVAVRHYEKA
120 130
>>NP_004093 (OMIM: 134651) fatty acid-binding protein, h (133 aa)
initn: 325 init1: 160 opt: 335 Z-score: 440.2 bits: 87.2 E(85289): 8.8e-18
Smith-Waterman score: 335; 43.7% identity (73.3% similar) in 135 aa overlap (4-138:5-132)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: :.::.. :.::.. .: :::. :. ::. .::.. :...:: . .:: .:
NP_004 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQ--VASMTKPTTIIEKNGDILTLKTHSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.::.: ::.: :.: : ::.: .. .:.: .: : .: .:. .::: ::.
NP_004 KNTEISFKLGVEFDETTADDRKVKSIVTLDG-GKLV---HLQKWDGQETTLVRELI-DGK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
::::.: .::::.: .:
NP_004 LILTLTHGTAVCTRTYEKEA
120 130
>>NP_113679 (OMIM: 611866) retinol-binding protein 5 iso (135 aa)
initn: 306 init1: 165 opt: 320 Z-score: 421.1 bits: 83.7 E(85289): 1e-16
Smith-Waterman score: 320; 38.7% identity (72.3% similar) in 137 aa overlap (2-135:3-131)
10 20 30 40 50
pF1KE6 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
::..: .... ..:.:. :..:.... .::::. :: ::...:. . ..: .:
NP_113 MPPNLTGYYRFVSQKNMEDYLQALNISLAVRKIALLL--KPDKEIEHQGNHMTVRTLSTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEE--QTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
:. ..: :: :::: ..:::: :...: :: :. .:: : ::: :. .: . : .
NP_113 RNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEH-LVCVQ---KGEVPNRGWRHWL--E
60 70 80 90 100 110
120 130
pF1KE6 GELI-LTMTADDVVCTRVYVRE
::.. : .:: :.:: .:.
NP_113 GEMLYLELTARDAVCEQVFRKVR
120 130
>>NP_443192 (OMIM: 608604) retinoid-binding protein 7 [H (134 aa)
initn: 296 init1: 147 opt: 314 Z-score: 413.5 bits: 82.3 E(85289): 2.7e-16
Smith-Waterman score: 314; 39.3% identity (69.3% similar) in 140 aa overlap (1-137:1-133)
10 20 30 40 50
pF1KE6 MP-NFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
:: ..::.: .. :.::: . .::.. ::: : :: :.:.::.: :.:....
NP_443 MPADLSGTWTLLSSDNFEGYMLALGIDFATRKI--AKLLKPQKVIEQNGDSFTIHTNSSL
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQT--VDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
:. ..:::::::.:.. .:.: ::::: :... ...: :: :: . .::. . .:
NP_443 RNYFVKFKVGEEFDEDNRGLDNRKCKSLVIWDND-RLTCIQK---GEKKNRGWTHWIEGD
60 70 80 90 100 110
120 130
pF1KE6 GELILTMTADDVVCTRVYVRE
.: : : . :: ... :
NP_443 -KLHLEMFCEGQVCKQTFQRA
120 130
>>NP_002668 (OMIM: 170715) myelin P2 protein [Homo sapie (132 aa)
initn: 292 init1: 162 opt: 309 Z-score: 407.2 bits: 81.1 E(85289): 6.1e-16
Smith-Waterman score: 309; 39.7% identity (69.9% similar) in 136 aa overlap (1-135:1-129)
10 20 30 40 50
pF1KE6 MPN-FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
: : : :.::.. ::::.. .:.:::.. ::.. : ::.: :...:: . :.: .:
NP_002 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLA--KPTVIISKKGDIITIRTESTF
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
..:::.::.:.:::: :.:.: ::.: . . ... . .: .:. :.:.: :.
NP_002 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGS----LNQVQRWDGKETTIKRKLVN-GK
60 70 80 90 100 110
120 130
pF1KE6 LILTMTADDVVCTRVYVRE
.. :::::.:
NP_002 MVAECKMKGVVCTRIYEKV
120 130
138 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:41:09 2016 done: Tue Nov 8 09:41:10 2016
Total Scan time: 3.320 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]