FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6125, 176 aa
  1>>>pF1KE6125 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3298+/-0.000674; mu= 11.8011+/- 0.040
 mean_var=56.7224+/-11.522, 0's: 0 Z-trim(109.4): 13  B-trim: 0 in 0/49
 Lambda= 0.170293
 statistics sampled from 10852 (10858) to 10852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.334), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS1748.1 MPV17 gene_id:4358|Hs108|chr2           ( 176) 1222 307.9 2.1e-84
CCDS45421.1 MPV17L gene_id:255027|Hs108|chr16      ( 196)  277 75.7 1.8e-14
CCDS9279.1 PXMP2 gene_id:5827|Hs108|chr12          ( 195)  267 73.3 9.8e-14
CCDS42522.1 MPV17L2 gene_id:84769|Hs108|chr19      ( 206)  265 72.8 1.4e-13


>>CCDS1748.1 MPV17 gene_id:4358|Hs108|chr2                (176 aa)
 initn: 1222 init1: 1222 opt: 1222  Z-score: 1628.8  bits: 307.9 E(32554): 2.1e-84
Smith-Waterman score: 1222; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KE6 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDNW
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KE6 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL
              130       140       150       160       170      

>>CCDS45421.1 MPV17L gene_id:255027|Hs108|chr16           (196 aa)
 initn: 226 init1:  94 opt: 277  Z-score: 373.3  bits: 75.7 E(32554): 1.8e-14
Smith-Waterman score: 277; 30.7% identity (60.8% similar) in 166 aa overlap (4-169:5-164)

                10        20        30        40        50         
pF1KE6  MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGC
           : : .::   ::: ..::  :::.. :: ..:.:  :..  .. :  .  .:..  
CCDS45 MAGWWPALSRAARRHPWPTNVLLYGSLVSAGDALQQRLQGREANWRQTRRVATLVVTFHA
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE6 GFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAPCFLGCFLPLVGALNGLSAQDN
       .: . :   : ..:.: .:: .    : :.: ::   ::  .. :   .. :.:   .: 
CCDS45 NF-NYV---WLRLLERALPGRAPHALLAKLLCDQVVGAPIAVSAFYVGMSILQG--KDDI
                   70        80        90       100       110      

     120       130       140       150       160       170         
pF1KE6 WAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIWNSYLSWKAHRL   
       .  :.. . .. ... . :: :::.:: :::...: : .   . .: ...          
CCDS45 FLDLKQKFWNTYLSGLMYWPFVQLTNFSLVPVQWRTAYAGVCGFLWATFICFSQQSGDGT
          120       130       140       150       160       170    

CCDS45 FKSAFTILYTKGTSATEGYPKK
          180       190      

>>CCDS9279.1 PXMP2 gene_id:5827|Hs108|chr12               (195 aa)
 initn: 255 init1: 207 opt: 267  Z-score: 360.1  bits: 73.3 E(32554): 9.8e-14
Smith-Waterman score: 267; 29.9% identity (65.2% similar) in 164 aa overlap (11-170:29-191)

                                 10        20        30        40  
pF1KE6                   MALWRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRG
                                   :  .:  ... :.: : .::....: ..:.. 
CCDS92 MAPAASRLRAEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQ-MIEKKR
               10        20        30        40        50          

                 50        60        70        80        90        
pF1KE6 LQEHQR----GRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKMLLDQGGFAP
        .:..:    :  : ..  :  :.::.   .:  ....::  . . .:...:::.  :::
CCDS92 KKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAP
      60        70        80        90       100       110         

      100       110       120       130       140       150        
pF1KE6 CFLGCFLPLVGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVV
        ::  :. ... :.: .:.   ::..  .  ::  :. .:  .:. :.  :::..:.  .
CCDS92 AFLMLFFLIMNFLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFA
     120       130       140       150       160       170         

      160       170      
pF1KE6 QCVAVIWNSYLSWKAHRL
       . .:..: .::.      
CCDS92 NLAALFWYAYLASLGK  
     180       190       

>>CCDS42522.1 MPV17L2 gene_id:84769|Hs108|chr19           (206 aa)
 initn: 234 init1: 160 opt: 265  Z-score: 357.0  bits: 72.8 E(32554): 1.4e-13
Smith-Waterman score: 273; 29.7% identity (62.2% similar) in 185 aa overlap (4-175:6-188)

                 10                20        30         40         
pF1KE6   MALWRAYQRALAAHPWKVQ--------VLTAGSLMGLGDIISQQL-VERRGLQEHQRG
            ::  .: :.:     :        .:  :.::. :: . :.  .. :  :  .  
CCDS42 MARGGWRRLRRLLSAGQLLFQGRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPR
               10        20        30        40        50        60

      50        60        70        80           90       100      
pF1KE6 RTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKV---DALKKMLLDQGGFAPCFLGCFLP
       :. .: ..::. .:: .  ::  :::..:..      ..:::.:.::   .: .:: .  
CCDS42 RSASMFAVGCS-MGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVASP-LLGVWYF
               70         80        90       100       110         

         110       120       130       140       150       160     
pF1KE6 L-VGALNGLSAQDNWAKLQRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVIW
       : .: :.: .. ..  .:.. . .   ... .:::.:..:: .:: ..:.. .. ... :
CCDS42 LGLGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGW
      120       130       140       150       160       170        

         170                       
pF1KE6 NSYLSWKAHRL                 
       ..:::.  .:                  
CCDS42 DTYLSYLKYRSPVPLTPPGCVALDTRAD
      180       190       200      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:40:08 2016 done: Tue Nov  8 09:40:08 2016
 Total Scan time:  1.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]