FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6119, 75 aa
  1>>>pF1KE6119 75 - 75 aa - 75 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.1981+/-0.000276; mu= 12.5952+/- 0.017
 mean_var=42.0498+/- 8.231, 0's: 0 Z-trim(117.2): 2  B-trim: 22 in 1/50
 Lambda= 0.197785
 statistics sampled from 28964 (28966) to 28964 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(85289)
NP_004365 (OMIM: 124090) cytochrome c oxidase subu (  75)  489 145.6   7e-36
XP_016868509 (OMIM: 124090) PREDICTED: cytochrome  (  75)  489 145.6   7e-36


>>NP_004365 (OMIM: 124090) cytochrome c oxidase subunit   (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 765.1  bits: 145.6 E(85289): 7e-36
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KE6 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
               10        20        30        40        50        60

               70     
pF1KE6 DFEEMRKAGIFQSVK
       :::::::::::::::
NP_004 DFEEMRKAGIFQSVK
               70     

>>XP_016868509 (OMIM: 124090) PREDICTED: cytochrome c ox  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 765.1  bits: 145.6 E(85289): 7e-36
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KE6 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
               10        20        30        40        50        60

               70     
pF1KE6 DFEEMRKAGIFQSVK
       :::::::::::::::
XP_016 DFEEMRKAGIFQSVK
               70     




75 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:37:04 2016 done: Tue Nov  8 09:37:04 2016
 Total Scan time:  2.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]