FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6119, 75 aa
  1>>>pF1KE6119 75 - 75 aa - 75 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3778+/-0.000532; mu= 11.7223+/- 0.032
 mean_var=42.5700+/- 8.362, 0's: 0 Z-trim(110.6): 3  B-trim: 0 in 0/49
 Lambda= 0.196572
 statistics sampled from 11723 (11724) to 11723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.36), width:  16
 Scan time:  0.870

The best scores are:                                      opt bits E(32554)
CCDS6284.1 COX6C gene_id:1345|Hs108|chr8           (  75)  489 144.8 4.9e-36


>>CCDS6284.1 COX6C gene_id:1345|Hs108|chr8                (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 760.5  bits: 144.8 E(32554): 4.9e-36
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KE6 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK
               10        20        30        40        50        60

               70     
pF1KE6 DFEEMRKAGIFQSVK
       :::::::::::::::
CCDS62 DFEEMRKAGIFQSVK
               70     




75 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:37:03 2016 done: Tue Nov  8 09:37:03 2016
 Total Scan time:  0.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]