Result of FASTA (omim) for
pFN21AE6118
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6118, 80 aa
1>>>pF1KE6118 80 - 80 aa - 80 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4820+/-0.000297; mu= 11.2316+/- 0.018
mean_var=40.5372+/- 8.062, 0's: 0 Z-trim(116.2): 22 B-trim: 234 in 1/54
Lambda= 0.201441
statistics sampled from 27150 (27172) to 27150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.319), width: 16
Scan time: 2.440
The best scores are: opt bits E(85289)
NP_001857 (OMIM: 300885,300887) cytochrome c oxida ( 80) 545 164.5 1.6e-41
XP_011511935 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511933 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511939 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511932 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511937 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511934 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_005248113 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511936 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
NP_570972 (OMIM: 609811) cytochrome c oxidase subu ( 81) 428 130.5 2.8e-31
XP_011511940 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
XP_011511938 (OMIM: 609811) PREDICTED: cytochrome ( 81) 428 130.5 2.8e-31
>>NP_001857 (OMIM: 300885,300887) cytochrome c oxidase s (80 aa)
initn: 545 init1: 545 opt: 545 Z-score: 866.4 bits: 164.5 E(85289): 1.6e-41
Smith-Waterman score: 545; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV
10 20 30 40 50 60
70 80
pF1KE6 GIEWNLSPVGRVTPKEWRNQ
::::::::::::::::::::
NP_001 GIEWNLSPVGRVTPKEWRNQ
70 80
>>XP_011511935 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511933 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511939 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511932 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511937 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511934 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_005248113 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_005 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_005 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511936 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>NP_570972 (OMIM: 609811) cytochrome c oxidase subunit (81 aa)
initn: 435 init1: 428 opt: 428 Z-score: 682.6 bits: 130.5 E(85289): 2.8e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
NP_570 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
.:::::::::::::::::..:
NP_570 IGIEWNLSPVGRVTPKEWKHQ
70 80
80 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:36:22 2016 done: Tue Nov 8 09:36:22 2016
Total Scan time: 2.440 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]