FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6117, 133 aa
  1>>>pF1KE6117 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1647+/-0.000582; mu= 12.2432+/- 0.035
 mean_var=59.5338+/-11.896, 0's: 0 Z-trim(112.0): 16  B-trim: 696 in 1/49
 Lambda= 0.166224
 statistics sampled from 12783 (12797) to 12783 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.393), width:  16
 Scan time:  0.950

The best scores are:                                      opt bits E(32554)
CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11       ( 133)  894 221.7 1.1e-58
CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11       ( 132)  802 199.6 4.6e-52
CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11        ( 125)  563 142.3 7.9e-35
CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11      ( 132)  265 70.8 2.7e-13
CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11     ( 228)  236 64.0 5.3e-11


>>CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11            (133 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1167.3  bits: 221.7 E(32554): 1.1e-58
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
               70        80        90       100       110       120

              130   
pF1KE6 LIVIPVLIFQAYG
       :::::::::::::
CCDS41 LIVIPVLIFQAYG
              130   

>>CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11            (132 aa)
 initn: 774 init1: 774 opt: 802  Z-score: 1048.2  bits: 199.6 E(32554): 4.6e-52
Smith-Waterman score: 802; 91.6% identity (96.2% similar) in 131 aa overlap (1-131:1-130)

               10        20        30        40        50        60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
       ::: :::: :::::::::::::::::.:::.::.::::::: ::::::::::::::::::
CCDS41 MNHIVQTF-SPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVW
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
       ::::::::: :::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS41 SLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTIL
      60        70        80        90       100       110         

              130   
pF1KE6 LIVIPVLIFQAYG
       ::.::::. ::  
CCDS41 LIIIPVLVVQAQR
     120       130  

>>CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11             (125 aa)
 initn: 590 init1: 558 opt: 563  Z-score: 738.8  bits: 142.3 E(32554): 7.9e-35
Smith-Waterman score: 563; 82.4% identity (89.8% similar) in 108 aa overlap (22-129:1-106)

               10        20        30        40        50        60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
                            : :::::::::: : .   : ::::.:.:::::::::::
CCDS41                      MHKEEHEVAVLGPPPSTILPRSTVINIHSETSVPDHVVW
                                    10        20        30         

               70        80        90       100       110       120
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL
       :::::::.: ::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS41 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG
      40        50        60        70        80        90         

              130                  
pF1KE6 LIVIPVLIFQAYG               
       .:..  :.:                   
CCDS41 FILL--LVFGSVTVYHIMLQIIQEKRGY
     100         110       120     

>>CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11           (132 aa)
 initn: 307 init1: 260 opt: 265  Z-score: 352.2  bits: 70.8 E(32554): 2.7e-13
Smith-Waterman score: 277; 44.0% identity (69.0% similar) in 100 aa overlap (27-122:21-105)

               10        20        30        40        50        60
pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW
                                 : . .::::: : ::              ::..:
CCDS31       MDTAYPREDTRAPTPSKAGAHTALTLGAPH-P-PPR-------------DHLIW
                     10        20        30                        

               70        80        90       100           110      
pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGIL
       :.:.::..: :::::.:.:::.:.::.:.:::. .:. ..: ::: ::    :.:.  .:
CCDS31 SVFSTLYLNLCCLGFLALAYSIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLL
      40        50        60        70        80        90         

        120       130                   
pF1KE6 MTILLIVIPVLIFQAYG                
       .  :..                           
CCDS31 LLGLVVTGALHLARLAKDSAAFFSTKFDDADYD
     100       110       120       130  

>>CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11          (228 aa)
 initn: 280 init1: 231 opt: 236  Z-score: 310.9  bits: 64.0 E(32554): 5.3e-11
Smith-Waterman score: 247; 38.7% identity (68.5% similar) in 111 aa overlap (14-123:119-219)

                                10        20        30        40   
pF1KE6                  MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTS
                                     .: ::  . : :.. ..      ::    .
CCDS53 PAPEPSASPPMAPTLFPMESKSSKTDSVRAAGAPPACKHLAEKKTMT------NP----T
       90       100       110       120       130                  

            50         60        70        80        90       100  
pF1KE6 TVIHIRSETS-VPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYAST
       :::..  .:. : :. .::.:: ...: :::::::.:::.: ::.:...:..::   :.:
CCDS53 TVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKT
      140       150       160       170       180       190        

            110       120       130   
pF1KE6 AKCLNIWALILGILMTILLIVIPVLIFQAYG
       :. .:: .  :.    ::...          
CCDS53 ARLFNITSSALAASCIILVFIFLRYPLTDY 
      200       210       220         




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:35:45 2016 done: Tue Nov  8 09:35:45 2016
 Total Scan time:  0.950 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]