FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6114, 167 aa
  1>>>pF1KE6114 167 - 167 aa - 167 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2346+/-0.000596; mu= 13.3712+/- 0.036
 mean_var=67.3093+/-13.802, 0's: 0 Z-trim(112.4): 15  B-trim: 528 in 1/53
 Lambda= 0.156328
 statistics sampled from 13115 (13129) to 13115 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.403), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS11342.1 TCAP gene_id:8557|Hs108|chr17          ( 167) 1132 263.2 5.5e-71


>>CCDS11342.1 TCAP gene_id:8557|Hs108|chr17               (167 aa)
 initn: 1132 init1: 1132 opt: 1132  Z-score: 1387.9  bits: 263.2 E(32554): 5.5e-71
Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KE6 MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MATSELSCEVSEENCERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHQQGQCQVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEEREDTPIQLQELLALE
               70        80        90       100       110       120

              130       140       150       160       
pF1KE6 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TALGGQCVDRQEVAEITKQLPPVVPVSKPGALRRSLSRSMSQEAQRG
              130       140       150       160       




167 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:34:12 2016 done: Tue Nov  8 09:34:12 2016
 Total Scan time:  1.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]