Result of FASTA (ccds) for
pFN21AE6112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6112, 135 aa
1>>>pF1KE6112 135 - 135 aa - 135 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0956+/-0.000828; mu= 11.5752+/- 0.050
mean_var=53.8592+/-10.631, 0's: 0 Z-trim(105.6): 19 B-trim: 6 in 1/50
Lambda= 0.174761
statistics sampled from 8502 (8521) to 8502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.262), width: 16
Scan time: 1.090
The best scores are: opt bits E(32554)
CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 896 233.6 2.8e-62
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 499 133.5 3.7e-32
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 468 125.7 8.4e-30
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 451 121.4 1.7e-28
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 438 118.1 1.6e-27
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 397 107.8 2.1e-24
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 371 101.3 2.4e-22
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 280 78.3 1.6e-15
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 277 77.5 2.7e-15
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 234 66.8 6.9e-12
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 220 63.2 5.7e-11
>>CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 (135 aa)
initn: 896 init1: 896 opt: 896 Z-score: 1231.5 bits: 233.6 E(32554): 2.8e-62
Smith-Waterman score: 896; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
130
pF1KE6 VMNNVTCTRIYEKVE
:::::::::::::::
CCDS62 VMNNVTCTRIYEKVE
130
>>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa)
initn: 499 init1: 499 opt: 499 Z-score: 690.7 bits: 133.5 E(32554): 3.7e-32
Smith-Waterman score: 499; 58.7% identity (84.1% similar) in 126 aa overlap (9-134:7-132)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
: :.::.:..::.::: ::::.: ::.: .::: ::. : .::.::::.
CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:.:..: ::..:::::::.:::... .. :.: : :.:::::.:: ::: .::.:.::
CCDS62 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAEC
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
:..:.::::::::
CCDS62 KMKGVVCTRIYEKV
120 130
>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa)
initn: 467 init1: 443 opt: 468 Z-score: 648.5 bits: 125.7 E(32554): 8.4e-30
Smith-Waterman score: 468; 55.2% identity (85.6% similar) in 125 aa overlap (9-133:7-131)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
: :.::.:..::.::::.:::.: ::...::::. ::. .: .:::.:::.
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:.:..: ::..:.:.::: ::.... .. :.::. :.:::: .:: :: .: ::::::
CCDS62 KNTEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVEC
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
::..:: ::.::.
CCDS62 VMKGVTSTRVYERA
120 130
>>CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 (140 aa)
initn: 451 init1: 451 opt: 451 Z-score: 624.9 bits: 121.4 E(32554): 1.7e-28
Smith-Waterman score: 451; 51.1% identity (77.9% similar) in 131 aa overlap (4-134:2-132)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
..::.: :. .. .. ..::::::.: : ::.: .::: :. :: .::::.: .
CCDS47 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:....: :::.::: : :.::.. .. .:.: :.:::::.:::::: :::.:::
CCDS47 KNNEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVES
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
..:.: ::: ::::
CCDS47 TVNSVICTRTYEKVSSNSVSNS
120 130 140
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 438 init1: 438 opt: 438 Z-score: 607.5 bits: 118.1 E(32554): 1.6e-27
Smith-Waterman score: 438; 50.0% identity (80.8% similar) in 130 aa overlap (4-133:2-131)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
:. . : :.:::::.::.::: ::::.: :....:.:: :: .: ::.::.::.
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:.:..: :: .:.::::: ::.... .. : ::. :.:::.:.:..:.: ::::..
CCDS34 KNTEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTL
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
. ....::: :::
CCDS34 THGTAVCTRTYEKEA
120 130
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 397 init1: 397 opt: 397 Z-score: 551.7 bits: 107.8 E(32554): 2.1e-24
Smith-Waterman score: 397; 45.4% identity (80.8% similar) in 130 aa overlap (4-133:2-131)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
:. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::.
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:.
CCDS51 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTL
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
....:. .: :::
CCDS51 TFGDVVAVRHYEKA
120 130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 368 init1: 336 opt: 371 Z-score: 514.7 bits: 101.3 E(32554): 2.4e-22
Smith-Waterman score: 371; 47.0% identity (81.7% similar) in 115 aa overlap (4-118:2-116)
10 20 30 40 50 60
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
:. . . :.:..:..:::::: ::::.: :..: ..:: ::. .: ...:.: ::.
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTF
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
:.:..: :::.:.::::: :. ..: .. ::. :.:::::....:..::::.:.
CCDS83 KNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVS
60 70 80 90 100 110
130
pF1KE6 VMNNVTCTRIYEKVE
CCDS83 NDNSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
120 130 140 150 160
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 206 init1: 120 opt: 280 Z-score: 392.0 bits: 78.3 E(32554): 1.6e-15
Smith-Waterman score: 280; 35.4% identity (73.1% similar) in 130 aa overlap (9-131:6-135)
10 20 30 40 50
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMG--AMAKPDCIITCDGKNLTIKTES
: :... :..:.: .: :::.. :::.. : .:: : .: .. ::: .
CCDS11 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTST
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 TLKTTQFSCTLGEKFEETTADGRKTQTVCNF-TDGALVQHQEW---DGKESTITRKL-KD
:..::... .::.::: :.::: ... .. ... .: .:. .: ... ::.: .:
CCDS11 TVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTND
60 70 80 90 100 110
120 130
pF1KE6 GKLVVECVMNNVTCTRIYEKVE
:.:.. . ..:.:::.:
CCDS11 GELILTMTADDVVCTRVYVRE
120 130
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 255 init1: 131 opt: 277 Z-score: 388.0 bits: 77.5 E(32554): 2.7e-15
Smith-Waterman score: 277; 37.2% identity (66.7% similar) in 129 aa overlap (9-131:6-134)
10 20 30 40 50
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMG--AMAKPDCIITCDGKNLTIKTES
: :.. .:..::: .: :::. :::.. : .:: : :: .. ::: .
CCDS10 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTST
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 TLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQ----EWDGKESTITRKLKDG
:..::... .:: ::: :.:::: ... .. . .. : :: .. ::.: .
CCDS10 TVRTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELAND
60 70 80 90 100 110
120 130
pF1KE6 KLVVECVMNNVTCTRIYEKVE
.:.. ..:.:::::
CCDS10 ELILTFGADDVVCTRIYVRE
120 130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 195 init1: 178 opt: 234 Z-score: 326.8 bits: 66.8 E(32554): 6.9e-12
Smith-Waterman score: 234; 32.1% identity (67.9% similar) in 131 aa overlap (9-135:69-197)
10 20 30
pF1KE6 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAM
: :... ...:.::.. : :..::::.. .
CCDS31 GSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVALRKIANL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE6 AKPDCIITCDGKNLTIKTESTLKTTQFSCTLGEKFEE--TTADGRKTQTVCNFTDGAL--
::: :. :: .. :.: ::... .. .:..::: : : :: .:. .. :
CCDS31 LKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC
100 110 120 130 140 150
100 110 120 130
pF1KE6 VQHQEWDGKESTITRKLKDGKLVVECVMNNVTCTRIYEKVE
::. : .:. :. .. .: .: ...:.: ....::.
CCDS31 VQKGEKEGR--GWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
135 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:32:56 2016 done: Tue Nov 8 09:32:56 2016
Total Scan time: 1.090 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]