FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6111, 142 aa
  1>>>pF1KE6111 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1915+/-0.000583; mu= 12.3088+/- 0.035
 mean_var=59.8570+/-11.886, 0's: 0 Z-trim(112.0): 7  B-trim: 2 in 1/49
 Lambda= 0.165774
 statistics sampled from 12862 (12868) to 12862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.395), width:  16
 Scan time:  1.210

The best scores are:                                      opt bits E(32554)
CCDS14547.1 KCNE5 gene_id:23630|Hs108|chrX         ( 142)  933 230.5 2.7e-61


>>CCDS14547.1 KCNE5 gene_id:23630|Hs108|chrX              (142 aa)
 initn: 933 init1: 933 opt: 933  Z-score: 1214.0  bits: 230.5 E(32554): 2.7e-61
Smith-Waterman score: 933; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KE6 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNCSESQRLRTLLSRLLLELHHRGNASGLGAGPRPSMGMGVVPDPFVGREVTSAKGDDAY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LYILLIMIFYACLAGGLILAYTRSRKLVEAKDEPSQACAEHEWAPGGALTADAEAAAGSQ
               70        80        90       100       110       120

              130       140  
pF1KE6 AEGRRQLASEGLPALAQGAERV
       ::::::::::::::::::::::
CCDS14 AEGRRQLASEGLPALAQGAERV
              130       140  




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:32:23 2016 done: Tue Nov  8 09:32:23 2016
 Total Scan time:  1.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]