Result of FASTA (ccds) for
pFN21AE6110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6110, 161 aa
1>>>pF1KE6110 161 - 161 aa - 161 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3774+/-0.000912; mu= 13.2397+/- 0.056
mean_var=108.8207+/-20.985, 0's: 0 Z-trim(108.6): 109 B-trim: 17 in 2/51
Lambda= 0.122947
statistics sampled from 10182 (10314) to 10182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.317), width: 16
Scan time: 1.560
The best scores are: opt bits E(32554)
CCDS2857.1 TNNC1 gene_id:7134|Hs108|chr3 ( 161) 1058 197.6 2.7e-51
CCDS13375.1 TNNC2 gene_id:7125|Hs108|chr20 ( 160) 673 129.3 9.8e-31
CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 ( 149) 512 100.7 3.7e-22
CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 ( 149) 512 100.7 3.7e-22
CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 ( 149) 512 100.7 3.7e-22
CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 ( 149) 488 96.5 7.1e-21
CCDS11820.1 CETN1 gene_id:1068|Hs108|chr18 ( 172) 375 76.5 8.4e-15
CCDS14716.1 CETN2 gene_id:1069|Hs108|chrX ( 172) 365 74.7 2.9e-14
CCDS81255.1 CALML6 gene_id:163688|Hs108|chr1 ( 164) 352 72.4 1.4e-13
CCDS30566.1 CALML6 gene_id:163688|Hs108|chr1 ( 181) 352 72.5 1.5e-13
CCDS9204.1 CABP1 gene_id:9478|Hs108|chr12 ( 167) 324 67.4 4.4e-12
CCDS9205.1 CABP1 gene_id:9478|Hs108|chr12 ( 227) 324 67.6 5.3e-12
CCDS31913.1 CABP1 gene_id:9478|Hs108|chr12 ( 370) 324 67.8 7.4e-12
CCDS7068.1 CALML5 gene_id:51806|Hs108|chr10 ( 146) 309 64.7 2.5e-11
CCDS8905.1 MYL6B gene_id:140465|Hs108|chr12 ( 208) 302 63.7 7.5e-11
>>CCDS2857.1 TNNC1 gene_id:7134|Hs108|chr3 (161 aa)
initn: 1058 init1: 1058 opt: 1058 Z-score: 1034.3 bits: 197.6 E(32554): 2.7e-51
Smith-Waterman score: 1058; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
70 80 90 100 110 120
130 140 150 160
pF1KE6 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
:::::::::::::::::::::::::::::::::::::::::
CCDS28 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
130 140 150 160
>>CCDS13375.1 TNNC2 gene_id:7125|Hs108|chr20 (160 aa)
initn: 849 init1: 610 opt: 673 Z-score: 665.3 bits: 129.3 E(32554): 9.8e-31
Smith-Waterman score: 673; 64.8% identity (84.0% similar) in 162 aa overlap (1-161:1-160)
10 20 30 40 50
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGC-ISTKELGKVMRMLGQNPTPEELQE
: : : :.::. :::::::.: :. : ::.:::: :::::::.:: :::.
CCDS13 MTDQQAEARSYLSEEMIAEFKAAFDMF--DADGGGDISVKELGTVMRMLGQTPTKEELDA
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 MIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKI
.:.:::::::::.::.:::::::: ::.:.::::::::.. ::.::.::::::: .::
CCDS13 IIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAE
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 MLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
...:.:: .:...:: ::::::::::::::.::::..:.::.
CCDS13 IFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMMEGVQ
120 130 140 150 160
>>CCDS33061.1 CALM3 gene_id:808|Hs108|chr19 (149 aa)
initn: 521 init1: 267 opt: 512 Z-score: 511.3 bits: 100.7 E(32554): 3.7e-22
Smith-Waterman score: 512; 52.0% identity (80.4% similar) in 148 aa overlap (10-157:3-146)
10 20 30 40 50 60
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
.:::::: ::: ::..: . :: :.::::: ::: :::::: :::.:
CCDS33 MADQLTEEQIAEFKEAFSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
:.::: ::.::.:: :::.::.: ::: . ::::. . ::.:::...:::. ::. .
CCDS33 INEVDADGNGTIDFPEFLTMMARKMKDTD---SEEEIREAFRVFDKDGNGYISAAELRHV
60 70 80 90 100
130 140 150 160
pF1KE6 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
. :: .:.....:.....: ..::...:.::...:
CCDS33 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
110 120 130 140
>>CCDS1832.1 CALM2 gene_id:805|Hs108|chr2 (149 aa)
initn: 521 init1: 267 opt: 512 Z-score: 511.3 bits: 100.7 E(32554): 3.7e-22
Smith-Waterman score: 512; 52.0% identity (80.4% similar) in 148 aa overlap (10-157:3-146)
10 20 30 40 50 60
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
.:::::: ::: ::..: . :: :.::::: ::: :::::: :::.:
CCDS18 MADQLTEEQIAEFKEAFSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
:.::: ::.::.:: :::.::.: ::: . ::::. . ::.:::...:::. ::. .
CCDS18 INEVDADGNGTIDFPEFLTMMARKMKDTD---SEEEIREAFRVFDKDGNGYISAAELRHV
60 70 80 90 100
130 140 150 160
pF1KE6 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
. :: .:.....:.....: ..::...:.::...:
CCDS18 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
110 120 130 140
>>CCDS9892.1 CALM1 gene_id:801|Hs108|chr14 (149 aa)
initn: 521 init1: 267 opt: 512 Z-score: 511.3 bits: 100.7 E(32554): 3.7e-22
Smith-Waterman score: 512; 52.0% identity (80.4% similar) in 148 aa overlap (10-157:3-146)
10 20 30 40 50 60
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
.:::::: ::: ::..: . :: :.::::: ::: :::::: :::.:
CCDS98 MADQLTEEQIAEFKEAFSLFDKDG-DGTITTKELGTVMRSLGQNPTEAELQDM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
:.::: ::.::.:: :::.::.: ::: . ::::. . ::.:::...:::. ::. .
CCDS98 INEVDADGNGTIDFPEFLTMMARKMKDTD---SEEEIREAFRVFDKDGNGYISAAELRHV
60 70 80 90 100
130 140 150 160
pF1KE6 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
. :: .:.....:.....: ..::...:.::...:
CCDS98 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
110 120 130 140
>>CCDS7069.1 CALML3 gene_id:810|Hs108|chr10 (149 aa)
initn: 496 init1: 264 opt: 488 Z-score: 488.3 bits: 96.5 E(32554): 7.1e-21
Smith-Waterman score: 488; 47.3% identity (80.4% similar) in 148 aa overlap (10-157:3-146)
10 20 30 40 50 60
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEM
.:::::: .::: ::..: . ::::.:.::: ::: :::::: ::..:
CCDS70 MADQLTEEQVTEFKEAFSLFDKDG-DGCITTRELGTVMRSLGQNPTEAELRDM
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 IDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIM
..:.:.::.::::: ::: ::.: ::: . .:::. . ::.:::...:... ::. .
CCDS70 MSEIDRDGNGTVDFPEFLGMMARKMKDTD---NEEEIREAFRVFDKDGNGFVSAAELRHV
60 70 80 90 100
130 140 150 160
pF1KE6 LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
. :: .......:... .: ..::...:.::.. .
CCDS70 MTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK
110 120 130 140
>>CCDS11820.1 CETN1 gene_id:1068|Hs108|chr18 (172 aa)
initn: 272 init1: 172 opt: 375 Z-score: 379.2 bits: 76.5 E(32554): 8.4e-15
Smith-Waterman score: 375; 38.5% identity (77.7% similar) in 148 aa overlap (11-158:24-167)
10 20 30 40
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRM
.:::.::.: . :::.: . . .: :..::: .::
CCDS11 MASGFKKPSAASTGQKRKVAPKPELTEDQKQEVREAFDLFDVDG-SGTIDAKELKVAMRA
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 LGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKN
:: .: ::...::.:::..:.: ..:..::..:.. : :. ..::. ::.:: .
CCDS11 LGFEPRKEEMKKMISEVDREGTGKISFNDFLAVMTQKM---SEKDTKEEILKAFRLFDDD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 ADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
: :.. .:: . . ::..:.....:.. ..:...::... .:::..::
CCDS11 ETGKISFKNLKRVANELGENLTDEELQEMIDEADRDGDGEVNEEEFLRIMKKTSLY
120 130 140 150 160 170
>>CCDS14716.1 CETN2 gene_id:1069|Hs108|chrX (172 aa)
initn: 270 init1: 166 opt: 365 Z-score: 369.6 bits: 74.7 E(32554): 2.9e-14
Smith-Waterman score: 365; 37.8% identity (76.4% similar) in 148 aa overlap (11-158:24-167)
10 20 30 40
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRM
.::::::.:.. :::.: . : :..::: .::
CCDS14 MASNFKKANMASSSQRKRMSPKPELTEEQKQEIREAFDLFDADGT-GTIDVKELKVAMRA
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 LGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKN
:: .: ::...::.:.:..:.: ..: .::..:.. : :. ..::. :..:: .
CCDS14 LGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKM---SEKDTKEEILKAFKLFDDD
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 ADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
: :.. .:: . . ::..:.....:.. ..:...::... .:::..::
CCDS14 ETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKKTSLY
120 130 140 150 160 170
>>CCDS81255.1 CALML6 gene_id:163688|Hs108|chr1 (164 aa)
initn: 340 init1: 201 opt: 352 Z-score: 357.4 bits: 72.4 E(32554): 1.4e-13
Smith-Waterman score: 352; 40.0% identity (70.0% similar) in 150 aa overlap (10-159:11-157)
10 20 30 40 50
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQE
:.:. :: .:.:..:..: . .: ..: :: .: .:: ::: ::
CCDS81 MGLQQEISLTERLSAEQIKEYKGVFEMFDEEG-NGEVKTGELEWLMSLLGINPTKSELAS
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 MIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKI
: .::.:..: . : ::..: . .. ..: :: ::.:::.. :::: . ::
CCDS81 MAKDVDRDNKGFFNCDGFLALM--GVYHEKAQNQESELRAAFRVFDKEGKGYIDWNTLKY
60 70 80 90 100 110
120 130 140 150 160
pF1KE6 MLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
.:. .:: ..: . :..::..::..: :::.::. .: :
CCDS81 VLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMMTGESFKLIQ
120 130 140 150 160
>>CCDS30566.1 CALML6 gene_id:163688|Hs108|chr1 (181 aa)
initn: 340 init1: 201 opt: 352 Z-score: 356.9 bits: 72.5 E(32554): 1.5e-13
Smith-Waterman score: 352; 40.0% identity (70.0% similar) in 150 aa overlap (10-159:28-174)
10 20 30 40
pF1KE6 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELG
:.:. :: .:.:..:..: . .: ..: ::
CCDS30 MGLQQEISLQPWCHHPAESCQTTTDMTERLSAEQIKEYKGVFEMFDEEG-NGEVKTGELE
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 KVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFR
.: .:: ::: :: : .::.:..: . : ::..: . .. ..: :: ::
CCDS30 WLMSLLGINPTKSELASMAKDVDRDNKGFFNCDGFLALM--GVYHEKAQNQESELRAAFR
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 MFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE
.:::.. :::: . :: .:. .:: ..: . :..::..::..: :::.::. .: :
CCDS30 VFDKEGKGYIDWNTLKYVLMNAGEPLNEVEAEQMMKEADKDGDRTIDYEEFVAMMTGESF
120 130 140 150 160 170
CCDS30 KLIQ
180
161 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 09:32:00 2016 done: Tue Nov 8 09:32:00 2016
Total Scan time: 1.560 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]