FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6109, 150 aa
  1>>>pF1KE6109 150 - 150 aa - 150 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0402+/-0.000303; mu= 12.7484+/- 0.019
 mean_var=56.0798+/-11.393, 0's: 0 Z-trim(116.1): 11  B-trim: 41 in 1/52
 Lambda= 0.171266
 statistics sampled from 27085 (27087) to 27085 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.318), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(85289)
NP_004246 (OMIM: 603773) cytochrome c oxidase subu ( 150)  999 254.4   5e-68


>>NP_004246 (OMIM: 603773) cytochrome c oxidase subunit   (150 aa)
 initn: 999 init1: 999 opt: 999  Z-score: 1342.2  bits: 254.4 E(85289): 5e-68
Smith-Waterman score: 999; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KE6 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK
               70        80        90       100       110       120

              130       140       150
pF1KE6 EIYPYVIQELRPTLNELGISTPEELGLDKV
       ::::::::::::::::::::::::::::::
NP_004 EIYPYVIQELRPTLNELGISTPEELGLDKV
              130       140       150




150 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:31:28 2016 done: Tue Nov  8 09:31:28 2016
 Total Scan time:  3.170 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]