FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6108, 121 aa
  1>>>pF1KE6108 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1049+/-0.000492; mu= 12.3412+/- 0.030
 mean_var=65.7369+/-13.204, 0's: 0 Z-trim(115.9): 2  B-trim: 939 in 1/50
 Lambda= 0.158187
 statistics sampled from 16483 (16485) to 16483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.506), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS6266.2 NDUFAF6 gene_id:137682|Hs108|chr8       ( 333)  690 165.0 2.8e-41


>>CCDS6266.2 NDUFAF6 gene_id:137682|Hs108|chr8            (333 aa)
 initn: 690 init1: 690 opt: 690  Z-score: 854.5  bits: 165.0 E(32554): 2.8e-41
Smith-Waterman score: 690; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KE6 MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGRSVAAASGPGAWGTDHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MAASAHGSVWGPLRLGIPGLCCRRPPLGLYARMRRLPGPEVSGRSVAAASGPGAWGTDHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQAGLLLLLSCCTVCHWDLNTKH
       :::::::::::::::::::::::::::::::::::::::                     
CCDS62 CLELLRKRDYEGYLCSLLLPAESRSSVFALRAFNVELAQVKDSVSEKTIGLMRMQFWKKT
               70        80        90       100       110       120

                                                                   
pF1KE6 C                                                           
                                                                   
CCDS62 VEDIYCDNPPHQPVAIELWKAVKRHNLTKRWLMKIVDEREKNLDDKAYRNIKELENYAEN
              130       140       150       160       170       180




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:30:59 2016 done: Tue Nov  8 09:30:59 2016
 Total Scan time:  1.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]