FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6104, 131 aa
  1>>>pF1KE6104 131 - 131 aa - 131 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5485+/-0.000645; mu= 9.8832+/- 0.039
 mean_var=61.3387+/-12.097, 0's: 0 Z-trim(110.1): 8  B-trim: 0 in 0/53
 Lambda= 0.163760
 statistics sampled from 11343 (11346) to 11343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS948.1 C1orf54 gene_id:79630|Hs108|chr1         ( 131)  850 208.5 9.5e-55
CCDS72905.1 C1orf54 gene_id:79630|Hs108|chr1       ( 121)  644 159.8   4e-40


>>CCDS948.1 C1orf54 gene_id:79630|Hs108|chr1              (131 aa)
 initn: 850 init1: 850 opt: 850  Z-score: 1096.4  bits: 208.5 E(32554): 9.5e-55
Smith-Waterman score: 850; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KE6 MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DRLNRLDKDITEAIETTISLETARADHPKPVTVKPVTTEPSPDLNDAVSSLRSPIPLLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DRLNRLDKDITEAIETTISLETARADHPKPVTVKPVTTEPSPDLNDAVSSLRSPIPLLLS
               70        80        90       100       110       120

              130 
pF1KE6 CAFVQVGMYFM
       :::::::::::
CCDS94 CAFVQVGMYFM
              130 

>>CCDS72905.1 C1orf54 gene_id:79630|Hs108|chr1            (121 aa)
 initn: 644 init1: 644 opt: 644  Z-score: 833.9  bits: 159.8 E(32554): 4e-40
Smith-Waterman score: 644; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100)

               10        20        30        40        50        60
pF1KE6 MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MDVLFVAIFAVPLILGQEYEDEERLGEDEYYQVVYYYTVTPSYDDFSADFTIDYSIFESE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DRLNRLDKDITEAIETTISLETARADHPKPVTVKPVTTEPSPDLNDAVSSLRSPIPLLLS
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS72 DRLNRLDKDITEAIETTISLETARADHPKPVTVKPVTTEPVEEGCYDSLDGSLARGNWKI
               70        80        90       100       110       120

              130 
pF1KE6 CAFVQVGMYFM
                  
CCDS72 K          
                  




131 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:29:20 2016 done: Tue Nov  8 09:29:20 2016
 Total Scan time:  1.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]