Result of FASTA (omim) for
pFN21AE5834
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5834, 459 aa
1>>>pF1KE5834 459 - 459 aa - 459 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2868+/-0.000458; mu= 12.7167+/- 0.029
mean_var=348.7342+/-79.729, 0's: 0 Z-trim(120.4): 132 B-trim: 3947 in 2/53
Lambda= 0.068679
statistics sampled from 35535 (35705) to 35535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.419), width: 16
Scan time: 10.220
The best scores are: opt bits E(85289)
NP_001307873 (OMIM: 400006,415000) RNA-binding mot ( 459) 3230 334.1 4.7e-91
XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA- ( 435) 2971 308.4 2.4e-83
XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA- ( 422) 2330 244.9 3.1e-64
NP_005049 (OMIM: 400006,415000) RNA-binding motif ( 496) 2331 245.1 3.2e-64
XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA- ( 385) 1825 194.8 3.5e-49
NP_001307874 (OMIM: 400006,415000) RNA-binding mot ( 356) 1577 170.2 8.3e-42
NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 1201 133.0 1.4e-30
NP_055284 (OMIM: 605444) RNA-binding motif protein ( 392) 902 103.3 1.2e-21
NP_001158275 (OMIM: 300199,300238) RNA-binding mot ( 196) 376 50.7 4.1e-06
NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 355 48.5 1.6e-05
XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 355 48.5 1.6e-05
XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 355 48.6 1.6e-05
NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 355 48.6 1.6e-05
XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 355 48.7 1.8e-05
NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 356 49.0 2e-05
NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 293 42.3 0.0011
>>NP_001307873 (OMIM: 400006,415000) RNA-binding motif p (459 aa)
initn: 3230 init1: 3230 opt: 3230 Z-score: 1755.7 bits: 334.1 E(85289): 4.7e-91
Smith-Waterman score: 3230; 100.0% identity (100.0% similar) in 459 aa overlap (1-459:1-459)
10 20 30 40 50 60
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
370 380 390 400 410 420
430 440 450
pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
:::::::::::::::::::::::::::::::::::::::
NP_001 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
430 440 450
>>XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA-bind (435 aa)
initn: 2968 init1: 2968 opt: 2971 Z-score: 1617.2 bits: 308.4 E(85289): 2.4e-83
Smith-Waterman score: 2971; 96.6% identity (97.5% similar) in 438 aa overlap (22-459:3-435)
10 20 30 40 50 60
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
. :: .:. : . ::::::::::::::::::::
XP_016 MRRCLKQYLGNMVPYQ-----KDRTSKSRGFAFITFENPAD
10 20 30
70 80 90 100 110 120
pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
340 350 360 370 380 390
430 440 450
pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
:::::::::::::::::::::::::::::::::::::::
XP_016 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
400 410 420 430
>>XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA-bind (422 aa)
initn: 3520 init1: 2309 opt: 2330 Z-score: 1274.1 bits: 244.9 E(85289): 3.1e-64
Smith-Waterman score: 2431; 90.5% identity (90.7% similar) in 399 aa overlap (1-362:1-399)
10 20 30 40 50 60
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330
pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------
::::::::::::::::::::::::::::::
XP_011 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
310 320 330 340 350 360
340 350 360 370 380
pF1KE5 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
::::::::::::::::::::::::::::::.:
XP_011 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYATLFQKTVHITAEITWTGPKRGG
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE5 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
XP_011 GG
>>NP_005049 (OMIM: 400006,415000) RNA-binding motif prot (496 aa)
initn: 2309 init1: 2309 opt: 2331 Z-score: 1274.0 bits: 245.1 E(85289): 3.2e-64
Smith-Waterman score: 3113; 92.5% identity (92.5% similar) in 491 aa overlap (1-454:1-491)
10 20 30 40 50 60
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
250 260 270 280 290 300
310 320 330
pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------
::::::::::::::::::::::::::::::
NP_005 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD
310 320 330 340 350 360
340 350 360 370 380
pF1KE5 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
370 380 390 400 410 420
390 400 410 420 430 440
pF1KE5 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI
430 440 450 460 470 480
450
pF1KE5 VDGGESRSEKGDSSRY
:::::::::::
NP_005 VDGGESRSEKGDSSRY
490
>>XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA-bind (385 aa)
initn: 1779 init1: 1779 opt: 1825 Z-score: 1004.0 bits: 194.8 E(85289): 3.5e-49
Smith-Waterman score: 2542; 83.9% identity (83.9% similar) in 459 aa overlap (1-459:1-385)
10 20 30 40 50 60
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR
::::::::::::::::
XP_011 RDNGHSNRDEHSSRGY--------------------------------------------
250
310 320 330 340 350 360
pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY
::::::::::::::::::::::::::::::
XP_011 ------------------------------SYHDGYGEALGRDHSEHLSGSSYRDALQRY
260 270 280
370 380 390 400 410 420
pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP
290 300 310 320 330 340
430 440 450
pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
:::::::::::::::::::::::::::::::::::::::
XP_011 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
350 360 370 380
>>NP_001307874 (OMIM: 400006,415000) RNA-binding motif p (356 aa)
initn: 1525 init1: 1525 opt: 1577 Z-score: 871.5 bits: 170.2 E(85289): 8.3e-42
Smith-Waterman score: 2203; 89.6% identity (89.6% similar) in 356 aa overlap (141-459:1-356)
120 130 140 150 160 170
pF1KE5 SARGSRGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSA
::::::::::::::::::::::::::::::
NP_001 MSYSRGLIPVKRGPSSRSGGPPPKKSAPSA
10 20 30
180 190 200 210 220 230
pF1KE5 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE5 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS
100 110 120 130 140 150
300 310 320 330
pF1KE5 RGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGY--------------------
::::::::::::::::::::::::::::::::::::::::
NP_001 RGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
160 170 180 190 200 210
340 350 360 370
pF1KE5 -----------------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR
:::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA
280 290 300 310 320 330
440 450
pF1KE5 CGSSSYVASIVDGGESRSEKGDSSRY
::::::::::::::::::::::::::
NP_001 CGSSSYVASIVDGGESRSEKGDSSRY
340 350
>>NP_002130 (OMIM: 300199,300238) RNA-binding motif prot (391 aa)
initn: 1123 init1: 393 opt: 1201 Z-score: 669.8 bits: 133.0 E(85289): 1.4e-30
Smith-Waterman score: 1333; 51.9% identity (68.1% similar) in 464 aa overlap (1-459:1-391)
10 20 30 40 50
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.::
NP_002 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT
:::.::.::::::: ::::::::: ::::.:: :: :: :.:.: .::..::. :::
NP_002 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG
:: ::. ::.:::::. ...:: ::: .:::::: ::::::::.::::. .::.: ::
NP_002 RGP-PSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYA
...:.:. :..:: :::: . : :. .: : :::.:
NP_002 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYST----------------------
180 190 200 210
240 250 260 270 280 290
pF1KE5 YRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSS
.: .::: : :::.::::::: : ..::::::: ::
NP_002 --------KDSYSSRDYP---SSRDTRDYAPPPRDYTYRDYGHS--------------SS
220 230 240 250
300 310 320 330 340 350
pF1KE5 RETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQR
:. :: ::::: .::::. ::.:.: ::.::::. .
NP_002 RD--------------DYP--------SRGYSDRDGYGR--DRDYSDHPSGGSYRDSYES
260 270 280
360 370 380 390 400 410
pF1KE5 YGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQ
::.:..:::.::: :::::. . ::..:: :: : .:::: .:.. :..: :...
NP_002 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQER
290 300 310 320 330 340
420 430 440 450
pF1KE5 RNPPSLGRVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY
:::. : : ::.. .::: : : : :::..: . :::
NP_002 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY
350 360 370 380 390
>>NP_055284 (OMIM: 605444) RNA-binding motif protein, X- (392 aa)
initn: 629 init1: 280 opt: 902 Z-score: 509.7 bits: 103.3 E(85289): 1.2e-21
Smith-Waterman score: 923; 47.3% identity (65.9% similar) in 393 aa overlap (1-381:1-370)
10 20 30 40 50
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::.:: :.: :::.: : ::::.::: :.:::::::.:::.::
NP_055 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT
::: ::.::::::: :::::: :: ::.:.:. : :: ::.: : ::..::. ::
NP_055 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR-PR-FLRGTRGGGGGP
70 80 90 100 110
120 130 140 150 160 170
pF1KE5 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG
: ::. : :::::: :. . ::. .:.:::: : :::::..:::. ::: : :
NP_055 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARS-SGGG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 SQG-PMSQR-RENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSR
.: .. : :..:. :::: . :. .. : .::.. :: . . .: : .::
NP_055 MRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 GYAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRGHAYRDYGHSRRDESYSRG
:..:: :::. ::. ::: :. ..:. :::. ::: .: . :::..
NP_055 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRG------SHREPFESYGE-
240 250 260 270 280
300 310 320 330 340
pF1KE5 YRNRRSSRETREYAPPSRGHG--YRDY-GHSRRHESYSRGY-SYHDGYGEALGRDHSEHL
:. .: : ::: : : :..: :.: ..:: : :: ..::.. ....:
NP_055 LRGAAPGRGT----PPSYGGGGRYEEYRGYS--PDAYSGGRDSYSSSYGRSDRYSRGRHR
290 300 310 320 330 340
350 360 370 380 390 400
pF1KE5 SGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCD
: : . .: :: : ::. : :
NP_055 VGRPDRG--LSLSMERGCPPQRD---SYSRSGCRVPRGGGRLGGRLERGGGRSRY
350 360 370 380 390
410 420 430 440 450
pF1KE5 REHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY
>>NP_001158275 (OMIM: 300199,300238) RNA-binding motif p (196 aa)
initn: 368 init1: 222 opt: 376 Z-score: 230.7 bits: 50.7 E(85289): 4.1e-06
Smith-Waterman score: 376; 74.7% identity (88.0% similar) in 83 aa overlap (1-81:1-83)
10 20 30 40 50
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.::
NP_001 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 DAKNAAKDMNGKSL-HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGG
:::.::.::::: : : . : .:
NP_001 DAKDAARDMNGKLLYHVEEIVMEVHLEGNRCPLVEMFICPQEMMGILLKTAIQAEITQVL
70 80 90 100 110 120
>>NP_001287744 (OMIM: 602649) cold-inducible RNA-binding (168 aa)
initn: 244 init1: 168 opt: 355 Z-score: 220.1 bits: 48.5 E(85289): 1.6e-05
Smith-Waterman score: 355; 44.7% identity (67.6% similar) in 170 aa overlap (4-169:2-166)
10 20 30 40 50
pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA
:. ::::.:::. .:::. :. ::.:.: ::::...::: :..::::.:.::::
NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPS-FQSGGRRRPPASSRNRSPSGSLRSARG-SRG
:::.: :::::. :. :.:.:: : : .: : : :..:. .: :. :: :::
NP_001 DAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRG-RGFSRG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 G-TRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS
: ::. ... . .::: . . ::. . : :.::.: . : :
NP_001 GGDRGY-GGNRFESRSGGYGGSRDYYSSRSQ---SGGYSDRSSGGSYRDSYDSYG
120 130 140 150 160
180 190 200 210 220 230
pF1KE5 WMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR
459 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:05:49 2016 done: Tue Nov 8 07:05:51 2016
Total Scan time: 10.220 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]