FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5813, 926 aa
  1>>>pF1KE5813 926 - 926 aa - 926 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3377+/-0.00105; mu= 12.0693+/- 0.063
 mean_var=134.5735+/-26.407, 0's: 0 Z-trim(108.1): 26  B-trim: 45 in 1/50
 Lambda= 0.110559
 statistics sampled from 9975 (9993) to 9975 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.307), width:  16
 Scan time:  2.950

The best scores are:                                      opt bits E(32554)
CCDS42179.1 KCTD19 gene_id:146212|Hs108|chr16      ( 926) 6284 1014.6       0


>>CCDS42179.1 KCTD19 gene_id:146212|Hs108|chr16           (926 aa)
 initn: 6284 init1: 6284 opt: 6284  Z-score: 5422.6  bits: 1014.6 E(32554):    0
Smith-Waterman score: 6284; 100.0% identity (100.0% similar) in 926 aa overlap (1-926:1-926)

               10        20        30        40        50        60
pF1KE5 MEESGMAHESAEDLFHFNVGGWHFSVPRSKLSQFPDSLLWKEASALTSSESQRLFIDRDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEESGMAHESAEDLFHFNVGGWHFSVPRSKLSQFPDSLLWKEASALTSSESQRLFIDRDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 STFRHVHYYLYTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGKHHLRVRPADLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 STFRHVHYYLYTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGKHHLRVRPADLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VAERASLNYWRTWKCISKPSEFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVHYCFLPLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VAERASLNYWRTWKCISKPSEFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVHYCFLPLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LVAKYPSLVTEDNLLWLAETVALIECECSEFRFIVNFLRSQKILLPDNFSNIDVLEAEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVAKYPSLVTEDNLLWLAETVALIECECSEFRFIVNFLRSQKILLPDNFSNIDVLEAEVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 ILEIPALTEAVRWYRMNMGGCSPTTCSPLSPGKGARTASLESVKPLYTMALGLLVKYPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILEIPALTEAVRWYRMNMGGCSPTTCSPLSPGKGARTASLESVKPLYTMALGLLVKYPDS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ALGQLRIESTLDGSRLYITGNGVLFQHVKNWLGTCRLPLTETISEVYELCAFLDKRDITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALGQLRIESTLDGSRLYITGNGVLFQHVKNWLGTCRLPLTETISEVYELCAFLDKRDITY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 EPIKVALKTHLEPRTLAPMDVLNEWTAEITVYSPQQIIKVYVGSHWYATTLQTLLKYPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EPIKVALKTHLEPRTLAPMDVLNEWTAEITVYSPQQIIKVYVGSHWYATTLQTLLKYPEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 LSNPQRVYWITYGQTLLIHGDGQMFRHILNFLRLGKLFLPSEFKEWPLFCQEVEEYHIPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSNPQRVYWITYGQTLLIHGDGQMFRHILNFLRLGKLFLPSEFKEWPLFCQEVEEYHIPS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 LSEALAQCEAYKSWTQEKESENEEAFSIRRLHVVTEGPGSLVEFSRDTKETTAYMPVDFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSEALAQCEAYKSWTQEKESENEEAFSIRRLHVVTEGPGSLVEFSRDTKETTAYMPVDFE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 DCSDRTPWNKAKGNLVRSNQMDEAEQYTRPIQVSLCRNAKRAGNPSTYSHCRGLCTNPGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DCSDRTPWNKAKGNLVRSNQMDEAEQYTRPIQVSLCRNAKRAGNPSTYSHCRGLCTNPGH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 WGSHPESPPKKKCTTINLTQKSETKDPPATPMQKLISLVREWDMVNCKQWEFQPLTATRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WGSHPESPPKKKCTTINLTQKSETKDPPATPMQKLISLVREWDMVNCKQWEFQPLTATRS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE5 SPLEEATLQLPLGSEAASQPSTSAAWKAHSTASEKDPGPQAGAGAGAKDKGPEPTFKPYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPLEEATLQLPLGSEAASQPSTSAAWKAHSTASEKDPGPQAGAGAGAKDKGPEPTFKPYL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE5 PPKRAGTLKDWSKQRTKERESPAPEQPLPEASEVDSLGVILKVTHPPVVGSDGFCMFFED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPKRAGTLKDWSKQRTKERESPAPEQPLPEASEVDSLGVILKVTHPPVVGSDGFCMFFED
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE5 SIIYTTEMDNLRHTTPTASPQPQEVTFLSFSLSWEEMFYAQKCHCFLADIIMDSIRQKDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SIIYTTEMDNLRHTTPTASPQPQEVTFLSFSLSWEEMFYAQKCHCFLADIIMDSIRQKDP
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE5 KAITAKVVSLANRLWTLHISPKQFVVDLLAITGFKDDRHTQERLYSWVELTLPFARKYGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KAITAKVVSLANRLWTLHISPKQFVVDLLAITGFKDDRHTQERLYSWVELTLPFARKYGR
              850       860       870       880       890       900

              910       920      
pF1KE5 CMDLLIQRGLSRSVSYSILGKYLQED
       ::::::::::::::::::::::::::
CCDS42 CMDLLIQRGLSRSVSYSILGKYLQED
              910       920      




926 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:51:28 2016 done: Tue Nov  8 06:51:29 2016
 Total Scan time:  2.950 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]