Result of FASTA (ccds) for
pFN21AE5789
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5789, 616 aa
1>>>pF1KE5789 616 - 616 aa - 616 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8738+/-0.00117; mu= -1.4230+/- 0.071
mean_var=533.5060+/-113.150, 0's: 0 Z-trim(115.0): 67 B-trim: 774 in 1/53
Lambda= 0.055527
statistics sampled from 15553 (15598) to 15553 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.479), width: 16
Scan time: 3.840
The best scores are: opt bits E(32554)
CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10 ( 616) 4237 354.4 2.6e-97
CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX ( 577) 2535 218.0 2.8e-56
CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX ( 597) 1888 166.2 1.1e-40
>>CCDS7245.1 CSTF2T gene_id:23283|Hs108|chr10 (616 aa)
initn: 4237 init1: 4237 opt: 4237 Z-score: 1860.5 bits: 354.4 E(32554): 2.6e-97
Smith-Waterman score: 4237; 100.0% identity (100.0% similar) in 616 aa overlap (1-616:1-616)
10 20 30 40 50 60
pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ERGQVQMSDPRAPIPRGPVTPGGLPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRDSRAMET
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 INIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQ
550 560 570 580 590 600
610
pF1KE5 SILILKEQIQKSTGAS
::::::::::::::::
CCDS72 SILILKEQIQKSTGAS
610
>>CCDS14473.1 CSTF2 gene_id:1478|Hs108|chrX (577 aa)
initn: 1812 init1: 1221 opt: 2535 Z-score: 1123.9 bits: 218.0 E(32554): 2.8e-56
Smith-Waterman score: 2813; 69.7% identity (81.0% similar) in 631 aa overlap (1-615:1-576)
10 20 30 40 50 60
pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
:..:.:::::.::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS14 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
::::::::::::::::::::::::::::::::::::::::::::: .::.:.::::. :.
CCDS14 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
::::::::..:::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS14 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
:.:::::::::::. .. :: :. : : : ::: : :: .::::: ::: :
CCDS14 IVDPEIALKILHRQTNIPTLIAGNPQ------PVHGAGPG--SGSNVSMNQQNPQAPQAQ
190 200 210 220 230
250 260 270 280 290 300
pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
:. :. :::::. .:::.:::: .:::: : :::::.:::.:: :.:::: ::: .
CCDS14 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM
240 250 260 270 280 290
310 320 330 340 350
pF1KE5 ERGQVQMSDPRAPIPRGPVTPGGLP-PRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH
::::: :.:::: . :: . :...: ::::::::::::::::::::::::::::::::::
CCDS14 ERGQVPMQDPRAAMQRGSL-PANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPH
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE5 QGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPMIDQRGLPMDGRGGRD-----
:::::::. ::..::: ::.::::: .:: :..::::::.:::: :.:::::::
CCDS14 QGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGID
360 370 380 390 400 410
420 430 440 450 460
pF1KE5 SRAMETRAMETE----------VLETRVMERRGMETCAMETRGMEARGMDARGLEMRGPV
.:.::.::::.. ..:.:.:: :.::. :::.:.::.:::.:::.. ::::
CCDS14 ARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPV
420 430 440 450 460 470
470 480 490 500 510 520
pF1KE5 PSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNPGAGMQGTGIQGTGMQGAGIQ
:. :::. .:.:::.:::.:: ::: :::: . ::::::::.::
CCDS14 PGPRGPIPSGMQGPSPINMGAV-VPQGSRQVPVM---------------QGTGMQGASIQ
480 490 500 510
530 540 550 560 570 580
pF1KE5 GGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSPGQSQVTPQDQEKAALIMQVL
:: :::..:::::.::::::.::::::::::
CCDS14 GG------------------------------SQPGGFSPGQNQVTPQDHEKAALIMQVL
520 530 540
590 600 610
pF1KE5 QLTADQIAMLPPEQRQSILILKEQIQKSTGAS
:::::::::::::::::::::::::::::::
CCDS14 QLTADQIAMLPPEQRQSILILKEQIQKSTGAP
550 560 570
>>CCDS78498.1 CSTF2 gene_id:1478|Hs108|chrX (597 aa)
initn: 2453 init1: 1221 opt: 1888 Z-score: 843.7 bits: 166.2 E(32554): 1.1e-40
Smith-Waterman score: 2763; 67.6% identity (78.5% similar) in 651 aa overlap (1-615:1-596)
10 20 30 40 50 60
pF1KE5 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
:..:.:::::.::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS78 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
::::::::::::::::::::::::::::::::::::::::::::: .::.:.::::. :.
CCDS78 FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMR
::::::::..:::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS78 PEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IMDPEIALKILHRKIHVTPLIPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQ
:.:::::::::::. .. :: :. : : : ::: : :: .::::: ::: :
CCDS78 IVDPEIALKILHRQTNIPTLIAGNPQ------PVHGAGPG--SGSNVSMNQQNPQAPQAQ
190 200 210 220 230
250 260 270 280 290 300
pF1KE5 HLARRPVKDIPPLMQTPIQGGIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPL
:. :. :::::. .:::.:::: .:::: : :::::.:::.:: :.:::: ::: .
CCDS78 SLGGMHVNGAPPLMQASMQGGVPAPGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSM
240 250 260 270 280 290
310 320 330
pF1KE5 ERGQ--------------------VQMSDPRAPIPRGPVTPGGLP-PRGLLGDAPNDPRG
:::: : :.:::: . :: . :...: ::::::::::::::
CCDS78 ERGQGTLQHSPVGPAGPASIERVQVPMQDPRAAMQRGSL-PANVPTPRGLLGDAPNDPRG
300 310 320 330 340 350
340 350 360 370 380 390
pF1KE5 GTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEPRGPM
:::::::::::::::::::::::::::. ::..::: ::.::::: .:: :..::::::
CCDS78 GTLLSVTGEVEPRGYLGPPHQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPM
360 370 380 390 400 410
400 410 420 430 440
pF1KE5 IDQRGLPMDGRGGRD-----SRAMETRAMETE----------VLETRVMERRGMETCAME
.:::: :.::::::: .:.::.::::.. ..:.:.:: :.::. :::
CCDS78 LDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGLEARAMEARAMEARAMEARAME
420 430 440 450 460 470
450 460 470 480 490 500
pF1KE5 TRGMEARGMDARGLEMRGPVPSSRGPMTGGIQGPGPINIGAGGPPQGPRQVPGISGVGNP
.:.::.:::.:::.. :::::. :::. .:.:::.:::.:: ::: :::: .
CCDS78 ARAMEVRGMEARGMDTRGPVPGPRGPIPSGMQGPSPINMGAV-VPQGSRQVPVM------
480 490 500 510 520
510 520 530 540 550 560
pF1KE5 GAGMQGTGIQGTGMQGAGIQGGGMQGAGIQGVSIQGGGIQGGGIQGASKQGGSQPSSFSP
::::::::.:::: :::..:::
CCDS78 ---------QGTGMQGASIQGG------------------------------SQPGGFSP
530 540
570 580 590 600 610
pF1KE5 GQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS
::.::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS78 GQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAP
550 560 570 580 590
616 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:40:16 2016 done: Tue Nov 8 06:40:17 2016
Total Scan time: 3.840 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]