Result of FASTA (ccds) for
pFN21AE5784
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5784, 698 aa
1>>>pF1KE5784 698 - 698 aa - 698 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0418+/-0.000911; mu= 6.8215+/- 0.055
mean_var=148.1075+/-29.647, 0's: 0 Z-trim(110.8): 17 B-trim: 13 in 1/51
Lambda= 0.105387
statistics sampled from 11898 (11906) to 11898 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.366), width: 16
Scan time: 3.440
The best scores are: opt bits E(32554)
CCDS59449.1 ATRIP gene_id:84126|Hs108|chr3 ( 698) 4622 714.9 1e-205
CCDS2768.1 ATRIP gene_id:84126|Hs108|chr3 ( 791) 4622 714.9 1.1e-205
CCDS59450.1 ATRIP gene_id:84126|Hs108|chr3 ( 664) 4405 681.9 8.3e-196
CCDS2767.1 ATRIP gene_id:84126|Hs108|chr3 ( 764) 3716 577.1 3.2e-164
>>CCDS59449.1 ATRIP gene_id:84126|Hs108|chr3 (698 aa)
initn: 4622 init1: 4622 opt: 4622 Z-score: 3806.8 bits: 714.9 E(32554): 1e-205
Smith-Waterman score: 4622; 99.9% identity (100.0% similar) in 698 aa overlap (1-698:1-698)
10 20 30 40 50 60
pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 SVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERAN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 KLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 GREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 SSSSESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SSSSESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 CSRDGDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 CSRDGDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 SCVSSGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SCVSSGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 VHRLSDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VHRLSDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 NTSCDFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 NTSCDFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 LLYMYITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVIRALTVM
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS59 LLYMYITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVVRALTVM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 LHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 LHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMP
610 620 630 640 650 660
670 680 690
pF1KE5 GVSMLIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG
::::::::::::::::::::::::::::::::::::::
CCDS59 GVSMLIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG
670 680 690
>>CCDS2768.1 ATRIP gene_id:84126|Hs108|chr3 (791 aa)
initn: 4622 init1: 4622 opt: 4622 Z-score: 3806.0 bits: 714.9 E(32554): 1.1e-205
Smith-Waterman score: 4622; 99.9% identity (100.0% similar) in 698 aa overlap (1-698:94-791)
10 20 30
pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKE
::::::::::::::::::::::::::::::
CCDS27 DTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE5 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE5 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE5 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE5 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT
310 320 330 340 350 360
280 290 300 310 320 330
pF1KE5 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV
370 380 390 400 410 420
340 350 360 370 380 390
pF1KE5 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ
430 440 450 460 470 480
400 410 420 430 440 450
pF1KE5 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL
490 500 510 520 530 540
460 470 480 490 500 510
pF1KE5 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV
550 560 570 580 590 600
520 530 540 550 560 570
pF1KE5 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL
610 620 630 640 650 660
580 590 600 610 620 630
pF1KE5 AKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS27 AKLGVQSPLPPVTGSNCQCNVEVVRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT
670 680 690 700 710 720
640 650 660 670 680 690
pF1KE5 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV
730 740 750 760 770 780
pF1KE5 EDPEVECG
::::::::
CCDS27 EDPEVECG
790
>>CCDS59450.1 ATRIP gene_id:84126|Hs108|chr3 (664 aa)
initn: 4405 init1: 4405 opt: 4405 Z-score: 3628.9 bits: 681.9 E(32554): 8.3e-196
Smith-Waterman score: 4405; 99.8% identity (100.0% similar) in 664 aa overlap (35-698:1-664)
10 20 30 40 50 60
pF1KE5 PSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLE
::::::::::::::::::::::::::::::
CCDS59 MKVMEEEVLIKNGEIKILRDSLHQTESVLE
10 20 30
70 80 90 100 110 120
pF1KE5 EQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAA
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE5 PSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGRED
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE5 SKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE5 ESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNECSRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNECSRD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE5 GDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE5 SGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRL
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE5 SDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSC
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE5 DFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYM
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE5 YITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQ
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS59 YITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVVRALTVMLHRQ
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE5 WLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 WLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSM
580 590 600 610 620 630
670 680 690
pF1KE5 LIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG
::::::::::::::::::::::::::::::::::
CCDS59 LIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG
640 650 660
>>CCDS2767.1 ATRIP gene_id:84126|Hs108|chr3 (764 aa)
initn: 3711 init1: 3711 opt: 3716 Z-score: 3061.8 bits: 577.1 E(32554): 3.2e-164
Smith-Waterman score: 4367; 96.1% identity (96.1% similar) in 698 aa overlap (1-698:94-764)
10 20 30
pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKE
::::::::::::::::::::::::::::::
CCDS27 DTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKE
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE5 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE5 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG
190 200 210 220 230 240
160 170 180 190 200 210
pF1KE5 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ
250 260 270 280 290 300
220 230 240 250 260 270
pF1KE5 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT
310 320 330 340 350 360
280 290 300 310 320 330
pF1KE5 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV
370 380 390 400 410 420
340 350 360 370 380 390
pF1KE5 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ
430 440 450 460 470 480
400 410 420 430 440 450
pF1KE5 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL
490 500 510 520 530 540
460 470 480 490 500 510
pF1KE5 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV
550 560 570 580 590 600
520 530 540 550 560 570
pF1KE5 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVV---
610 620 630 640 650 660
580 590 600 610 620 630
pF1KE5 AKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT
::::::::::::::::::::::::::::::::::::
CCDS27 ------------------------RALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT
670 680 690
640 650 660 670 680 690
pF1KE5 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV
700 710 720 730 740 750
pF1KE5 EDPEVECG
::::::::
CCDS27 EDPEVECG
760
698 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:37:30 2016 done: Tue Nov 8 06:37:31 2016
Total Scan time: 3.440 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]