FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5779, 645 aa
  1>>>pF1KE5779 645 - 645 aa - 645 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0113+/-0.000973; mu= 15.4604+/- 0.058
 mean_var=72.5221+/-14.728, 0's: 0 Z-trim(104.8): 19  B-trim: 0 in 0/49
 Lambda= 0.150605
 statistics sampled from 8100 (8111) to 8100 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.249), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS1311.1 DARS2 gene_id:55157|Hs108|chr1          ( 645) 4326 949.6       0
CCDS10923.1 KARS gene_id:3735|Hs108|chr16          ( 597)  270 68.3 3.3e-11
CCDS45532.1 KARS gene_id:3735|Hs108|chr16          ( 625)  270 68.4 3.5e-11


>>CCDS1311.1 DARS2 gene_id:55157|Hs108|chr1               (645 aa)
 initn: 4326 init1: 4326 opt: 4326  Z-score: 5076.9  bits: 949.6 E(32554):    0
Smith-Waterman score: 4326; 100.0% identity (100.0% similar) in 645 aa overlap (1-645:1-645)

               10        20        30        40        50        60
pF1KE5 MYFPSWLSQLYRGLSRPIRRTTQPIWGSLYRSLLQSSQRRIPEFSSFVVRTNTCGELRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MYFPSWLSQLYRGLSRPIRRTTQPIWGSLYRSLLQSSQRRIPEFSSFVVRTNTCGELRSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 HLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLGQEVTLCGWIQYRRQNTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 FQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKEFLVPSREPGKFYSLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 QSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIME
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 SQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 VVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 IRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRD
              550       560       570       580       590       600

              610       620       630       640     
pF1KE5 VIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKPTDSKAERAH
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKPTDSKAERAH
              610       620       630       640     

>>CCDS10923.1 KARS gene_id:3735|Hs108|chr16               (597 aa)
 initn: 258 init1: 120 opt: 270  Z-score: 314.6  bits: 68.3 E(32554): 3.3e-11
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (129-301:185-358)

      100       110       120       130        140       150       
pF1KE5 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
                                     : :: :   ::. :      ::. : . ::
CCDS10 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
          160       170       180       190       200       210    

        160       170         180       190       200       210    
pF1KE5 FEIKNFVKKTEALRLQYRYLDL--RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
           .:  : .  : . :::::   .:  : .. .::...  .: .: .: ::..:::: 
CCDS10 HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
            220       230       240        250       260           

          220         230       240       250       260       270  
pF1KE5 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
       ...  ::::  : :..   :      .  .:. ....:.:::.:: ....: .:.::   
CCDS10 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
     270       280       290       300       310       320         

            280       290       300       310       320       330  
pF1KE5 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
        ..::::  .. :...:   .. . : ..                               
CCDS10 THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
     330       340       350       360       370       380         

>>CCDS45532.1 KARS gene_id:3735|Hs108|chr16               (625 aa)
 initn: 224 init1: 120 opt: 270  Z-score: 314.3  bits: 68.4 E(32554): 3.5e-11
Smith-Waterman score: 270; 32.4% identity (60.3% similar) in 179 aa overlap (129-301:213-386)

      100       110       120       130        140       150       
pF1KE5 SAASVKKILCEAPVESVVQVSGTVISRPAGQENP-KMPTGEIEIKVKTAELLNAC-KKLP
                                     : :: :   ::. :      ::. : . ::
CCDS45 QVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLP
            190       200       210       220       230       240  

        160       170         180       190       200       210    
pF1KE5 FEIKNFVKKTEALRLQYRYLDL--RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPT
           .:  : .  : . :::::   .:  : .. .::...  .: .: .: ::..:::: 
CCDS45 HL--HFGLKDKETRYRQRYLDLILNDFVRQ-KFIIRSKIITYIRSFLDEL-GFLEIETP-
              250       260       270        280        290        

          220         230       240       250       260       270  
pF1KE5 LFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRP
       ...  ::::  : :..   :      .  .:. ....:.:::.:: ....: .:.::   
CCDS45 MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL
       300       310       320       330       340       350       

            280       290       300       310       320       330  
pF1KE5 DRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDK
        ..::::  .. :...:   .. . : ..                               
CCDS45 THNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTP
       360       370       380       390       400       410       




645 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:34:41 2016 done: Tue Nov  8 06:34:41 2016
 Total Scan time:  3.490 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]