Result of FASTA (omim) for
pFN21AE5766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5766, 589 aa
1>>>pF1KE5766 589 - 589 aa - 589 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2416+/-0.000516; mu= 19.5548+/- 0.032
mean_var=67.7702+/-13.472, 0's: 0 Z-trim(107.2): 32 B-trim: 0 in 0/51
Lambda= 0.155796
statistics sampled from 15207 (15225) to 15207 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.533), E-opt: 0.2 (0.179), width: 16
Scan time: 8.140
The best scores are: opt bits E(85289)
NP_005678 (OMIM: 609690) phenylalanine--tRNA ligas ( 589) 3843 873.6 0
XP_016858599 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210
XP_006712232 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210
XP_011508768 (OMIM: 609690) PREDICTED: phenylalani ( 490) 3208 730.8 2.5e-210
>>NP_005678 (OMIM: 609690) phenylalanine--tRNA ligase be (589 aa)
initn: 3843 init1: 3843 opt: 3843 Z-score: 4667.3 bits: 873.6 E(85289): 0
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589)
10 20 30 40 50 60
pF1KE5 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG
490 500 510 520 530 540
550 560 570 580
pF1KE5 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
550 560 570 580
>>XP_016858599 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa)
initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210
Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490)
70 80 90 100 110 120
pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI
::::::::::::::::::::::::::::::
XP_016 MPDGKIQKLIITEETAKIRPFAVAAVLRNI
10 20 30
130 140 150 160 170 180
pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
340 350 360 370 380 390
490 500 510 520 530 540
pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
400 410 420 430 440 450
550 560 570 580
pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
::::::::::::::::::::::::::::::::::::::::
XP_016 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
460 470 480 490
>>XP_006712232 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa)
initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210
Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490)
70 80 90 100 110 120
pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI
::::::::::::::::::::::::::::::
XP_006 MPDGKIQKLIITEETAKIRPFAVAAVLRNI
10 20 30
130 140 150 160 170 180
pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
340 350 360 370 380 390
490 500 510 520 530 540
pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
400 410 420 430 440 450
550 560 570 580
pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
::::::::::::::::::::::::::::::::::::::::
XP_006 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
460 470 480 490
>>XP_011508768 (OMIM: 609690) PREDICTED: phenylalanine-- (490 aa)
initn: 3208 init1: 3208 opt: 3208 Z-score: 3897.1 bits: 730.8 E(85289): 2.5e-210
Smith-Waterman score: 3208; 100.0% identity (100.0% similar) in 490 aa overlap (100-589:1-490)
70 80 90 100 110 120
pF1KE5 NRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNI
::::::::::::::::::::::::::::::
XP_011 MPDGKIQKLIITEETAKIRPFAVAAVLRNI
10 20 30
130 140 150 160 170 180
pF1KE5 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKT
40 50 60 70 80 90
190 200 210 220 230 240
pF1KE5 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTR
100 110 120 130 140 150
250 260 270 280 290 300
pF1KE5 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMV
160 170 180 190 200 210
310 320 330 340 350 360
pF1KE5 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAA
220 230 240 250 260 270
370 380 390 400 410 420
pF1KE5 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGV
280 290 300 310 320 330
430 440 450 460 470 480
pF1KE5 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV
340 350 360 370 380 390
490 500 510 520 530 540
pF1KE5 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEGPAFFPGRCA
400 410 420 430 440 450
550 560 570 580
pF1KE5 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
::::::::::::::::::::::::::::::::::::::::
XP_011 EIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
460 470 480 490
589 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:28:11 2016 done: Tue Nov 8 06:28:13 2016
Total Scan time: 8.140 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]