FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5757, 759 aa
  1>>>pF1KE5757 759 - 759 aa - 759 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7149+/-0.00121; mu= 3.0726+/- 0.074
 mean_var=359.2406+/-73.115, 0's: 0 Z-trim(110.8): 57  B-trim: 0 in 0/55
 Lambda= 0.067668
 statistics sampled from 11882 (11911) to 11882 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.366), width:  16
 Scan time:  4.590

The best scores are:                                      opt bits E(32554)
CCDS5801.1 RBM28 gene_id:55131|Hs108|chr7          ( 759) 4955 498.6 1.6e-140
CCDS55159.1 RBM28 gene_id:55131|Hs108|chr7         ( 618) 3790 384.7 2.3e-106


>>CCDS5801.1 RBM28 gene_id:55131|Hs108|chr7               (759 aa)
 initn: 4955 init1: 4955 opt: 4955  Z-score: 2636.5  bits: 498.6 E(32554): 1.6e-140
Smith-Waterman score: 4955; 100.0% identity (100.0% similar) in 759 aa overlap (1-759:1-759)

               10        20        30        40        50        60
pF1KE5 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DEEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPAKSSDHSEEDSDLEESDSIDDGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLKVDLAVTR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 DEAAKLQTTKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DEAAKLQTTKVKKPTGTRNLYLAREGLIRAGTKAAEGVSAADMAKRERFELLKHQKLKDQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 NIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 NIFVSRTRLCLHNLPKAVDDKQLRKLLLSATSGEKGVRIKECRVMRDLKGVHGNMKGQSL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 GYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GYAFAEFQEHEHALKALRLINNNPEIFGPLKRPIVEFSLEDRRKLKMKELRIQRSLQKMR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 SKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVPPEQKRKAGSTSWTGFQTKAEVEQVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SKPATGEPQKGQPEPAKDQQQKAAQHHTEEQSKVPPEQKRKAGSTSWTGFQTKAEVEQVE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE5 LPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQINQWKQEKQQLSSEQVSRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LPDGKKRRKVLALPSHRGPKIRLRDKGKVKPVHPKKPKPQINQWKQEKQQLSSEQVSRKK
              670       680       690       700       710       720

              730       740       750         
pF1KE5 AKGNKTETRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS
       :::::::::::::::::::::::::::::::::::::::
CCDS58 AKGNKTETRFNQLVEQYKQKLLGPSKGAPLAKRSKWFDS
              730       740       750         

>>CCDS55159.1 RBM28 gene_id:55131|Hs108|chr7              (618 aa)
 initn: 3790 init1: 3790 opt: 3790  Z-score: 2022.9  bits: 384.7 E(32554): 2.3e-106
Smith-Waterman score: 3790; 100.0% identity (100.0% similar) in 580 aa overlap (180-759:39-618)

     150       160       170       180       190       200         
pF1KE5 DGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS
                                     ::::::::::::::::::::::::::::::
CCDS55 GRLPPSARSEQLEELFSQVGPVKQCFVVTEKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS
       10        20        30        40        50        60        

     210       220       230       240       250       260         
pF1KE5 HESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDEDEEEENIESKVTKPVQIQK
       70        80        90       100       110       120        

     270       280       290       300       310       320         
pF1KE5 RAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RAVKRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPS
      130       140       150       160       170       180        

     330       340       350       360       370       380         
pF1KE5 DVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAA
      190       200       210       220       230       240        

     390       400       410       420       430       440         
pF1KE5 QKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGTRNLYLAREGLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKCLLAASPENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKVKKPTGTRNLYLAREGLIR
      250       260       270       280       290       300        

     450       460       470       480       490       500         
pF1KE5 AGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AGTKAAEGVSAADMAKRERFELLKHQKLKDQNIFVSRTRLCLHNLPKAVDDKQLRKLLLS
      310       320       330       340       350       360        

     510       520       530       540       550       560         
pF1KE5 ATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ATSGEKGVRIKECRVMRDLKGVHGNMKGQSLGYAFAEFQEHEHALKALRLINNNPEIFGP
      370       380       390       400       410       420        

     570       580       590       600       610       620         
pF1KE5 LKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LKRPIVEFSLEDRRKLKMKELRIQRSLQKMRSKPATGEPQKGQPEPAKDQQQKAAQHHTE
      430       440       450       460       470       480        

     630       640       650       660       670       680         
pF1KE5 EQSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EQSKVPPEQKRKAGSTSWTGFQTKAEVEQVELPDGKKRRKVLALPSHRGPKIRLRDKGKV
      490       500       510       520       530       540        

     690       700       710       720       730       740         
pF1KE5 KPVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPSKGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KPVHPKKPKPQINQWKQEKQQLSSEQVSRKKAKGNKTETRFNQLVEQYKQKLLGPSKGAP
      550       560       570       580       590       600        

     750         
pF1KE5 LAKRSKWFDS
       ::::::::::
CCDS55 LAKRSKWFDS
      610        




759 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:30:33 2016 done: Tue Nov  8 04:30:33 2016
 Total Scan time:  4.590 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]