FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5753, 725 aa
  1>>>pF1KE5753 725 - 725 aa - 725 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0196+/-0.000823; mu= 8.0878+/- 0.050
 mean_var=142.4953+/-28.831, 0's: 0 Z-trim(112.6): 11  B-trim: 307 in 1/50
 Lambda= 0.107442
 statistics sampled from 13350 (13354) to 13350 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.41), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS7329.2 USP54 gene_id:159195|Hs108|chr10        (1684) 3306 524.3 5.9e-148


>>CCDS7329.2 USP54 gene_id:159195|Hs108|chr10             (1684 aa)
 initn: 3306 init1: 3306 opt: 3306  Z-score: 2769.8  bits: 524.3 E(32554): 5.9e-148
Smith-Waterman score: 4842; 93.8% identity (93.8% similar) in 757 aa overlap (1-710:913-1669)

                                             10        20        30
pF1KE5                               MDTEFGASSFFHSPASCHESHSSLSPESSA
                                     ::::::::::::::::::::::::::::::
CCDS73 TQAGTLSQPTSEQPIPLQVLLSQEAQLESGMDTEFGASSFFHSPASCHESHSSLSPESSA
            890       900       910       920       930       940  

               40        50        60        70        80        90
pF1KE5 PQHSSPSRSALKLLTSVEVDNIEPSAFHRQGLPKAPGWTEKNSHHSWEPLDAPEGKLQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PQHSSPSRSALKLLTSVEVDNIEPSAFHRQGLPKAPGWTEKNSHHSWEPLDAPEGKLQGS
            950       960       970       980       990      1000  

              100       110       120       130       140       150
pF1KE5 RCDNSSCSKLPPQEGRGIAQEQLFQEKKDPANPSPVMPGIATSERGDEHSLGCSPSNSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RCDNSSCSKLPPQEGRGIAQEQLFQEKKDPANPSPVMPGIATSERGDEHSLGCSPSNSSA
           1010      1020      1030      1040      1050      1060  

              160       170       180       190       200       210
pF1KE5 QPSLPLYRTCHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLTLKVDRGSEETYRPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QPSLPLYRTCHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLTLKVDRGSEETYRPEF
           1070      1080      1090      1100      1110      1120  

              220       230       240       250       260       270
pF1KE5 PSTKGLVRSLAEQFQRMQGVSMRDSTGFKDRSLSGSLRKNSSPSDSKPPFSQGQEKGHWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSTKGLVRSLAEQFQRMQGVSMRDSTGFKDRSLSGSLRKNSSPSDSKPPFSQGQEKGHWP
           1130      1140      1150      1160      1170      1180  

              280       290       300       310       320       330
pF1KE5 WAKQQSSLEGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLSQVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WAKQQSSLEGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLSQVRD
           1190      1200      1210      1220      1230      1240  

              340       350       360       370       380       390
pF1KE5 VRSKDLGSSTDLGTSLPLDSWVNITRFCDSQLKHGAPRPGMKSSPHDSHTCVTYPERNHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VRSKDLGSSTDLGTSLPLDSWVNITRFCDSQLKHGAPRPGMKSSPHDSHTCVTYPERNHI
           1250      1260      1270      1280      1290      1300  

              400       410       420       430       440       450
pF1KE5 LLHPHWNQDTEQETSELESLYQASLQASQAGCSGWGQQDTAWHPLSQTGSADGMGRRLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LLHPHWNQDTEQETSELESLYQASLQASQAGCSGWGQQDTAWHPLSQTGSADGMGRRLHS
           1310      1320      1330      1340      1350      1360  

              460       470                                        
pF1KE5 AHDPGLSKTSTAEMEHGLHEARTVRTSQ--------------------------------
       ::::::::::::::::::::::::::::                                
CCDS73 AHDPGLSKTSTAEMEHGLHEARTVRTSQATPCRGLSRECGEDEQYSAENLRRISRSLSGT
           1370      1380      1390      1400      1410      1420  

                  480          490       500       510       520   
pF1KE5 ------------HS---SNVRKPLETGHRCSSSSSLPVIHDPSVFLLGPQLYLPQPQFLS
                   ::   :::::::::::::::::::::::::::::::::::::::::::
CCDS73 VVSEREEAPVSSHSFDSSNVRKPLETGHRCSSSSSLPVIHDPSVFLLGPQLYLPQPQFLS
           1430      1440      1450      1460      1470      1480  

           530       540       550       560       570       580   
pF1KE5 PDVLMPTMAGEPNRLPGTSRSVQQFLAMCDRGETSQGAKYTGRTLNYQSLPHRSRTDNSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PDVLMPTMAGEPNRLPGTSRSVQQFLAMCDRGETSQGAKYTGRTLNYQSLPHRSRTDNSW
           1490      1500      1510      1520      1530      1540  

           590       600       610       620       630       640   
pF1KE5 APWSETNQHIGTRFLTTPGCNPQLTYTATLPERSKGLQVPHTQSWSDLFHSPSHPPIVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 APWSETNQHIGTRFLTTPGCNPQLTYTATLPERSKGLQVPHTQSWSDLFHSPSHPPIVHP
           1550      1560      1570      1580      1590      1600  

           650       660       670       680       690       700   
pF1KE5 VYPPSSSLHVPLRSAWNSDPVPGSRTPGPRRVDMPPDDDWRQSSYASHSGHRRTVGEGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VYPPSSSLHVPLRSAWNSDPVPGSRTPGPRRVDMPPDDDWRQSSYASHSGHRRTVGEGFL
           1610      1620      1630      1640      1650      1660  

           710       720     
pF1KE5 FVLSDAPRREQIRARVLQHSQW
       :::::::               
CCDS73 FVLSDAPRREQIRARVLQHSQW
           1670      1680    




725 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:21:49 2016 done: Tue Nov  8 06:21:50 2016
 Total Scan time:  4.080 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]