Result of FASTA (ccds) for
pFN21AE5742
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5742, 678 aa
1>>>pF1KE5742 678 - 678 aa - 678 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6578+/-0.00103; mu= 18.3699+/- 0.062
mean_var=83.0144+/-16.714, 0's: 0 Z-trim(105.3): 51 B-trim: 65 in 2/48
Lambda= 0.140766
statistics sampled from 8310 (8354) to 8310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.257), width: 16
Scan time: 3.280
The best scores are: opt bits E(32554)
CCDS11416.1 DHX58 gene_id:79132|Hs108|chr17 ( 678) 4517 927.7 0
CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025) 897 192.7 2.3e-48
CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9 ( 925) 436 99.0 3.2e-20
>>CCDS11416.1 DHX58 gene_id:79132|Hs108|chr17 (678 aa)
initn: 4517 init1: 4517 opt: 4517 Z-score: 4957.6 bits: 927.7 E(32554): 0
Smith-Waterman score: 4517; 100.0% identity (100.0% similar) in 678 aa overlap (1-678:1-678)
10 20 30 40 50 60
pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVLVNRVHLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEEEHV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPGTGGASKLDG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HDHLEMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALHLRRYNDALLIHDTVRAV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQAKKWSRVPFSVP
610 620 630 640 650 660
670
pF1KE5 DFDFLQHCAENLSDLSLD
::::::::::::::::::
CCDS11 DFDFLQHCAENLSDLSLD
670
>>CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025 aa)
initn: 1654 init1: 684 opt: 897 Z-score: 981.9 bits: 192.7 E(32554): 2.3e-48
Smith-Waterman score: 1667; 40.5% identity (68.1% similar) in 703 aa overlap (15-668:320-1019)
10 20 30 40
pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLET
:::::::: ::::.::::.:.:.:: ::.
CCDS22 DSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDK
290 300 310 320 330 340
50 60 70 80 90
pF1KE5 VDGA----KVVVLVNRVHLVTQ-HGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCHDL
: ::.::::.: :: : .::. .: . : :::: . .: .... :.
CCDS22 KKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDI
350 360 370 380 390 400
100 110 120 130 140 150
pF1KE5 LICTAELLQMALTSPE--EEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRA
.: ::..:. .: . : :. :.:. ::::..::::::.:..::: :: .:: ::.
CCDS22 IISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNN
410 420 430 440 450 460
160 170 180 190 200
pF1KE5 Q---------PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ
. ::::.::::::::.:::.: : .:.:.::::::.. : . .. ::.
CCDS22 RLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLK
470 480 490 500 510 520
210 220 230 240 250 260
pF1KE5 EHSQQPCKQYNLCHRRSQDPFGDLLKKLMDQIHDHLEMPELSRKFGTQMYEQQVVKLSEA
.. :.:::.. . .::: . : ..: .:. . .: .: :::: ::: .... .
CCDS22 NQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMS-DFGTQPYEQWAIQMEKK
530 540 550 560 570 580
270 280 290 300 310 320
pF1KE5 AALAGLQEQRVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQIL-------
:: : ...:: : :::.::.:: :.::.: .:: . :. ::..:. : ..
CCDS22 AAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEG
590 600 610 620 630 640
330 340 350
pF1KE5 -----C-----------------AERRLLALFDDRKNELAHLATHGP-ENPKLEMLEKIL
: ..: :..:: . .. : .:: . :: :: :.. .
CCDS22 GDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTI
650 660 670 680 690 700
360 370 380 390 400 410
pF1KE5 QRQFSSSN-SPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQ
..:.. .. : ::::::.:::::..: :. ... . : ..:. :::::.::. :::
CCDS22 MEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQ
710 720 730 740 750 760
420 430 440 450 460 470
pF1KE5 RDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQS
.:.:::.::. : .:::.::.:::::::: .::.:.::::.::::.:::::::::::.:
CCDS22 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADES
770 780 790 800 810 820
480 490 500 510 520 530
pF1KE5 VYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQA
.:..:: :: ...: .:. : .: .:. ::.: :: :: .::. .. .. ..
CCDS22 TYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKT
830 840 850 860 870 880
540 550 560 570 580 590
pF1KE5 AQRENQRQQFPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVI
. .. . . .:: :: : . : :.. .: ::::..:.:.. : . :. ..
CCDS22 KRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELY-IVRENKAL
890 900 910 920 930 940
600 610 620 630 640 650
pF1KE5 NKVFKDWKPGGVISCRNCGEVWGLQMIYKSVKLPVLKVRS--MLLETPQGRIQAKKWSRV
.: :.. .: : :. ::..:: .:..:.. :: ::.:. ..... . . : ::: ..
CCDS22 QKKCADYQINGEIICK-CGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWVEL
950 960 970 980 990 1000
660 670
pF1KE5 PFSVPDFDFLQHCAENLSDLSLD
:.. :..:. . :
CCDS22 PITFPNLDYSECCLFSDED
1010 1020
>>CCDS6526.1 DDX58 gene_id:23586|Hs108|chr9 (925 aa)
initn: 820 init1: 180 opt: 436 Z-score: 476.6 bits: 99.0 E(32554): 3.2e-20
Smith-Waterman score: 1072; 32.3% identity (62.2% similar) in 694 aa overlap (4-663:244-919)
10 20 30
pF1KE5 MELRSYQWEVIMPALEGKNIIIWLPTGAGKTRA
:.:: :. .::..::: :: ::: ::: .
CCDS65 QEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV
220 230 240 250 260 270
40 50 60 70 80
pF1KE5 AAYVAKRHLETV-DG--AKVVVLVNRVHLVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAG
. . ..::. .: .::: ..:.. . :. : .... . . :: .:: . .
CCDS65 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP
280 290 300 310 320 330
90 100 110 120 130 140
pF1KE5 FGHLARCHDLLICTAELLQMALTSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY
.... .:..: : ..: : .. :..:.:.. ::::.: :. ::.:: .:
CCDS65 VEQIVENNDIIILTPQILVNNL---KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY
340 350 360 370 380 390
150 160 170 180 190 200
pF1KE5 LELKLQRAQ-PLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQ
:. :: .. :::::.::::: :.: :.. : :.... .:::.::. : . .. .:.
CCDS65 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE
400 410 420 430 440 450
210 220 230 240 250
pF1KE5 EHSQQPCKQYNLCHRRSQDPFGDLLKKLM-------DQIHDHLE-MPEL-SRKFGTQMYE
. .: : . . : .: : .. .:: .: :: . .. .:.:::: ::
CCDS65 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE
460 470 480 490 500 510
260 270 280 290 300
pF1KE5 QQVVKLSEAAALAGL----QEQRV------YALHLRRYNDALLIHDTVRAVDALAALQDF
: .: ...: . . .:.:. :. :::.:::::.: . .: ::: :.::
CCDS65 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF
520 530 540 550 560 570
310 320 330 340 350 360
pF1KE5 YHREHVTKTQILCAERRLLALFDDRKNELAHLATHGP--ENPKLEMLEKILQRQFSSSNS
. .: . . :. : :... .:: . .. : :::::: : :::... .
CCDS65 F--SNVRAAGFDEIEQDLTQRFEEKLQELESV-SRDPSNENPKLEDLCFILQEEYHLNPE
580 590 600 610 620
370 380 390 400 410 420
pF1KE5 PRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKF
:.:..:: . .: :.. . :. .. .: : :...:.: :: :. ... :
CCDS65 TITILFVKTRALVDALKNWIEGNPKLSF--LKPGILTGRGKTNQNTGMTLPAQKCILDAF
630 640 650 660 670 680
430 440 450 460 470 480
pF1KE5 Q-DGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGRARADQSVYAFVATEG
. .: :.:.:::::.::.:: .::.:. : . : :.:.:.:::.:: : :. : .
CCDS65 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS-KCFLLTSN
690 700 710 720 730 740
490 500 510 520 530 540
pF1KE5 SRELKRELINEALETLMEQAVAAVQKMDQAEYQAKIRDLQQAALTKRAAQAAQRENQRQQ
. ...: :: : .:.... .: :.: .. :: .: . . :..:..
CCDS65 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ-------THEKFIRDSQEKP
750 760 770 780 790
550 560 570 580 590 600
pF1KE5 FPV---EHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKD
:: :. .::: .: . . . .:.: .: :.. .. :.. . ::: : : :..
CCDS65 KPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECF-VSR-PHPKPKQFSS
800 810 820 830 840 850
610 620 630 640 650
pF1KE5 WKPGGVISC--RNCGEVWGLQMIYKSVKLPVLKVRSMLLETPQGRIQA--KKWSRVPFSV
.. . : : .::.. ::... ::. ..::.:..:...: .:. .::. :
CCDS65 FEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEK
860 870 880 890 900 910
660 670
pF1KE5 PDFDFLQHCAENLSDLSLD
::
CCDS65 IPFDPAEMSK
920
678 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:29:57 2016 done: Tue Nov 8 04:29:57 2016
Total Scan time: 3.280 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]