FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5740, 702 aa
  1>>>pF1KE5740 702 - 702 aa - 702 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7775+/-0.000884; mu= 14.2587+/- 0.054
 mean_var=118.9215+/-23.896, 0's: 0 Z-trim(110.6): 9  B-trim: 118 in 1/51
 Lambda= 0.117610
 statistics sampled from 11707 (11712) to 11707 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.36), width:  16
 Scan time:  4.210

The best scores are:                                      opt bits E(32554)
CCDS80.1 NOL9 gene_id:79707|Hs108|chr1             ( 702) 4751 817.4       0


>>CCDS80.1 NOL9 gene_id:79707|Hs108|chr1                  (702 aa)
 initn: 4751 init1: 4751 opt: 4751  Z-score: 4360.8  bits: 817.4 E(32554):    0
Smith-Waterman score: 4751; 99.6% identity (99.7% similar) in 702 aa overlap (1-702:1-702)

               10        20        30        40        50        60
pF1KE5 MADSGLLLKWGSCRSTWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRRRLLQAQAAGV
       ::::::::: ::::::::::::::::::::::::::::::::::::::: :::::::.::
CCDS80 MADSGLLLKRGSCRSTWLRVRKARPQLILSRRPRRRLGSLRWCGRRRLRWRLLQAQASGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DWREGARQVSRAAAARRPNTATPSPIPSPTPASEPESEPELESASSCHRPLLIPPVRPVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PGRALLLLPVEQGFTFSGICRVTCLYGQVQVFGFTISQGQPAQDIFSVYTHSCLSIHALH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 YSQPEKSKKELKREARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 YSQPEKSKKELKREARNLLKSHLNLDDRRWSMQNFSPQCSIVLLEHLKTATVNFITSYPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 SSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SSYIFVQESPTPQIKPEYLALRSVGIRREKKRKGLQLTESTLSALEELVNVSCEEVDGCP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 VILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLGP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 PFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRESPLIVNTMGWVSDQGLLLLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PFTHLRTPQKMVYYGKPSCKNNYENYIDIVKYVFSAYKRESPLIVNTMGWVSDQGLLLLI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 DLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 DLIRLLSPSHVVQFRSDHSKYMPDLTPQYVDDMDGLYTKSKTKMRNRRFRLAAFADALEF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 ADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ADEEKESPVEFTGHKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PLHSLTPYQVPFNAVALRITHSDVAPTHILYAVNASWVGLCKIQDDVRGYTNGPILLAQT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 PICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PICDCLGFGICRGIDMEKRLYHILTPVPPEELRTVNCLLVGAIAIPHCVLKCQRGIEGTV
              610       620       630       640       650       660

              670       680       690       700  
pF1KE5 PYVTTDYNFKLPGASEKIGAREPEEAHKEKPYRRPKFCRKMK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS80 PYVTTDYNFKLPGASEKIGAREPEEAHKEKPYRRPKFCRKMK
              670       680       690       700  




702 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:16:26 2016 done: Tue Nov  8 06:16:27 2016
 Total Scan time:  4.210 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]