FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5733, 642 aa
  1>>>pF1KE5733 642 - 642 aa - 642 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5729+/-0.00102; mu= -2.5754+/- 0.062
 mean_var=316.1232+/-63.191, 0's: 0 Z-trim(114.9): 2  B-trim: 0 in 0/52
 Lambda= 0.072135
 statistics sampled from 15441 (15443) to 15441 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.474), width:  16
 Scan time:  4.020

The best scores are:                                      opt bits E(32554)
CCDS12062.1 MUM1 gene_id:84939|Hs108|chr19         ( 711) 4348 466.2 6.6e-131
CCDS55469.1 MUM1L1 gene_id:139221|Hs108|chrX       ( 696) 1380 157.4 6.2e-38


>>CCDS12062.1 MUM1 gene_id:84939|Hs108|chr19              (711 aa)
 initn: 4348 init1: 4348 opt: 4348  Z-score: 2463.7  bits: 466.2 E(32554): 6.6e-131
Smith-Waterman score: 4348; 99.8% identity (99.8% similar) in 639 aa overlap (4-642:73-711)

                                          10        20        30   
pF1KE5                            MVSASQNEVPAAPLEELAYRRSLRVALDVLSEG
                                     ::::::::::::::::::::::::::::::
CCDS12 ILSLEEKIKVKSTEVEILEKSQIEAIASSLASQNEVPAAPLEELAYRRSLRVALDVLSEG
             50        60        70        80        90       100  

            40        50        60        70        80        90   
pF1KE5 SIWSQESSAGTGRADRSLRGKPMEHVSSPCDSNSSSLPRGDVLGSSRPHRRRPCVQQSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SIWSQESSAGTGRADRSLRGKPMEHVSSPCDSNSSSLPRGDVLGSSRPHRRRPCVQQSLS
            110       120       130       140       150       160  

           100       110       120       130       140       150   
pF1KE5 SSFTCEKDPECKVDHKKGLRKSENPRGPLVLPAGGGAQDESGSRIHHKNWTLASKRGRNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS12 SSFTCEKDPECKVDHKKGLRKSENPRGPLVLPAGGGAQDESGSRIHHKNWTLASKRGGNS
            170       180       190       200       210       220  

           160       170       180       190       200       210   
pF1KE5 AQKASLCLNGSSLSEDDTERDMGSKGGSWAAPSLPSGVREDDPCANAEGHDPGLPLGSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AQKASLCLNGSSLSEDDTERDMGSKGGSWAAPSLPSGVREDDPCANAEGHDPGLPLGSLT
            230       240       250       260       270       280  

           220       230       240       250       260       270   
pF1KE5 APPAPEPSACSEPGECPAKKRPRLDGSQRPPAVQLEPMAAGAAPSPGPGPGPRESVTPRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 APPAPEPSACSEPGECPAKKRPRLDGSQRPPAVQLEPMAAGAAPSPGPGPGPRESVTPRS
            290       300       310       320       330       340  

           280       290       300       310       320       330   
pF1KE5 TARLGPPPSHASADATRCLPCPDSQKLEKECQSSEESMGSNSMRSILEEDEEDEEPPRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TARLGPPPSHASADATRCLPCPDSQKLEKECQSSEESMGSNSMRSILEEDEEDEEPPRVL
            350       360       370       380       390       400  

           340       350       360       370       380       390   
pF1KE5 LYHEPRSFEVGMLVWHKHKKYPFWPAVVKSVRQRDKKASVLYIEGHMNPKMKGFTVSLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LYHEPRSFEVGMLVWHKHKKYPFWPAVVKSVRQRDKKASVLYIEGHMNPKMKGFTVSLKS
            410       420       430       440       450       460  

           400       410       420       430       440       450   
pF1KE5 LKHFDCKEKQTLLNQAREDFNQDIGWCVSLITDYRVRLGCGSFAGSFLEYYAADISYPVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKHFDCKEKQTLLNQAREDFNQDIGWCVSLITDYRVRLGCGSFAGSFLEYYAADISYPVR
            470       480       490       500       510       520  

           460       470       480       490       500       510   
pF1KE5 KSIQQDVLGTKLPQLSKGSPEEPVVGCPLGQRQPCRKMLPDRSRAARDRANQKLVEYIVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KSIQQDVLGTKLPQLSKGSPEEPVVGCPLGQRQPCRKMLPDRSRAARDRANQKLVEYIVK
            530       540       550       560       570       580  

           520       530       540       550       560       570   
pF1KE5 AKGAESHLRAILKSRKPSRWLQTFLSSSQYVTCVETYLEDEGQLDLVVKYLQGVYQEVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AKGAESHLRAILKSRKPSRWLQTFLSSSQYVTCVETYLEDEGQLDLVVKYLQGVYQEVGA
            590       600       610       620       630       640  

           580       590       600       610       620       630   
pF1KE5 KVLQRTNGDRIRFILDVLLPEAIICAISAVDEVDYKTAEEKYIKGPSLSYREKEIFDNQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KVLQRTNGDRIRFILDVLLPEAIICAISAVDEVDYKTAEEKYIKGPSLSYREKEIFDNQL
            650       660       670       680       690       700  

           640  
pF1KE5 LEERNRRRR
       :::::::::
CCDS12 LEERNRRRR
            710 

>>CCDS55469.1 MUM1L1 gene_id:139221|Hs108|chrX            (696 aa)
 initn: 1378 init1: 1287 opt: 1380  Z-score: 794.5  bits: 157.4 E(32554): 6.2e-38
Smith-Waterman score: 1522; 41.9% identity (67.1% similar) in 659 aa overlap (6-640:73-689)

                                        10        20        30     
pF1KE5                          MVSASQNEVPAAPLEELAYRRSLRVALDVLSEGSI
                                     :.:  : : :: :: :::.::: .:.: . 
CCDS55 SLDEKIKLDSTETKILNKSQIEAIAASLGLQSEDSAPPTEETAYGRSLKVALGILNERTN
             50        60        70        80        90       100  

          40        50        60        70        80        90     
pF1KE5 WSQESSAGTGRADRSLRGKPMEHVSSPCDSNSSSLPRGDVLGSSRPHRRRPCVQQSLSSS
        :: :..   .     .. :... .::   ..    .::. :  . ..   :.   :.::
CCDS55 LSQASTSDEEEITMLSQNVPQKQSDSP-PHKKYRKDEGDLPGCLEERENSACL---LASS
            110       120        130       140       150           

         100       110       120       130       140       150     
pF1KE5 FTCEKDPECKVDHKKGLRKSENPRGPLVLPAGGGAQDESGSRIHHKNWTLASKRGRNSAQ
          :.:     :      ::. :    ..:          :... :           : :
CCDS55 ---ESDDSLYDD------KSQAPTMVDTIP----------SEVETK-----------SLQ
         160             170                 180                   

         160       170       180       190       200        210    
pF1KE5 KASLCLNGSSLSEDDTERDMGSKGGSWAAPSLPSGVREDDPCANAEGHDPGL-PLGS--L
       ..: : .  :::::. :..  .:    :. :. :.:.:.. :.. :   : : ::.:  :
CCDS55 NSSWCETFPSLSEDNDEKENKNKIDISAVMSVHSAVKEESACVKDEKFAPPLSPLSSDML
      190       200       210       220       230       240        

                         220              230       240       250  
pF1KE5 TAPPAPE-------------PSACS-------EPGECPAKKRPRLDGSQRPPAVQLEPMA
         : : .             :: ::       .::: :..  : :: ::  :... : :.
CCDS55 IMPKALKEESEDTCLETLAVPSECSAFSENIEDPGEGPSN--PCLDTSQNQPSMESE-MG
      250       260       270       280         290       300      

            260       270       280       290       300       310  
pF1KE5 AGAAPSPGPGPGPRESVTPRSTARLGPPPSHASADATRCLPCPDSQKLEKECQSSEESMG
       :.: :    :   ::  .  :..      ::   .. : .   : ..::.: :.:..:. 
CCDS55 AAACP----GSCSRECEVSFSASNPVWDYSHL-MSSERNFQRLDFEELEEEGQASDKSLL
         310           320       330        340       350       360

             320       330       340       350       360       370 
pF1KE5 SNSMR-SILEEDEEDEEPPRVLLYHEPRSFEVGMLVWHKHKKYPFWPAVVKSVRQRDKKA
        . .  :.:..:::::: :: .:..: . ::.::.:: :..::::::::.::.:....::
CCDS55 PSRINLSLLDDDEEDEELPRFILHYETHPFETGMIVWFKYQKYPFWPAVIKSIRRKERKA
              370       380       390       400       410       420

             380       390       400       410       420       430 
pF1KE5 SVLYIEGHMNPKMKGFTVSLKSLKHFDCKEKQTLLNQAREDFNQDIGWCVSLITDYRVRL
       :::..:..:: . ::. :... ::.::::::: :...::::....: ::.::: :::::.
CCDS55 SVLFVEANMNSEKKGIRVNFRRLKKFDCKEKQMLVDKAREDYSESIDWCISLICDYRVRI
              430       440       450       460       470       480

             440       450       460       470       480       490 
pF1KE5 GCGSFAGSFLEYYAADISYPVRKSIQQDVLGTKLPQLSKGSPEEPVVGCPLGQRQPCRKM
       :::::.::.::::::::::::::  .::.. .:.:.: . . .::..     ...  .:.
CCDS55 GCGSFTGSLLEYYAADISYPVRKETKQDTFRNKFPKLHNEDAREPMAVTSQTKKMSFQKI
              490       500       510       520       530       540

             500       510       520       530       540       550 
pF1KE5 LPDRSRAARDRANQKLVEYIVKAKGAESHLRAILKSRKPSRWLQTFLSSSQYVTCVETYL
       :::: .:::::::..::..::.:::.:.:: ::... : ::::..::...... :.:::.
CCDS55 LPDRMKAARDRANKNLVDFIVNAKGTENHLLAIVNGTKGSRWLKSFLNANRFTPCIETYF
              550       560       570       580       590       600

             560       570       580       590       600       610 
pF1KE5 EDEGQLDLVVKYLQGVYQEVGAKVLQRTNGDRIRFILDVLLPEAIICAISAVDEVDYKTA
       ::: ::: :::::: : ...   .    . :.:.:::.:::::::::.::::: .::..:
CCDS55 EDEDQLDEVVKYLQEVCNQIDQIMPTWIKDDKIKFILEVLLPEAIICSISAVDGLDYEAA
              610       620       630       640       650       660

             620       630       640       
pF1KE5 EEKYIKGPSLSYREKEIFDNQLLEERNRRRR     
       : ::.::: :.:::.:.:: ... :. :.       
CCDS55 EAKYLKGPCLGYRERELFDAKIIYEKRRKAPTNEAH
              670       680       690      




642 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:11:26 2016 done: Tue Nov  8 06:11:26 2016
 Total Scan time:  4.020 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]