Result of FASTA (omim) for
pFN21AE5714
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5714, 786 aa
1>>>pF1KE5714 786 - 786 aa - 786 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3913+/-0.000415; mu= 14.6432+/- 0.026
mean_var=84.9307+/-17.195, 0's: 0 Z-trim(113.3): 15 B-trim: 556 in 1/49
Lambda= 0.139169
statistics sampled from 22611 (22625) to 22611 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.265), width: 16
Scan time: 8.680
The best scores are: opt bits E(85289)
NP_003162 (OMIM: 605122) ATP-dependent RNA helicas ( 786) 5261 1066.8 0
NP_001288612 (OMIM: 605122) ATP-dependent RNA heli ( 655) 4393 892.5 0
NP_001310513 (OMIM: 605122) ATP-dependent RNA heli ( 655) 4393 892.5 0
NP_001310515 (OMIM: 605122) ATP-dependent RNA heli ( 665) 4249 863.6 0
NP_001310514 (OMIM: 605122) ATP-dependent RNA heli ( 665) 4249 863.6 0
NP_001310517 (OMIM: 605122) ATP-dependent RNA heli ( 457) 3020 616.8 6.7e-176
NP_001310516 (OMIM: 605122) ATP-dependent RNA heli ( 457) 3020 616.8 6.7e-176
>>NP_003162 (OMIM: 605122) ATP-dependent RNA helicase SU (786 aa)
initn: 5261 init1: 5261 opt: 5261 Z-score: 5706.9 bits: 1066.8 E(85289): 0
Smith-Waterman score: 5261; 100.0% identity (100.0% similar) in 786 aa overlap (1-786:1-786)
10 20 30 40 50 60
pF1KE5 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE5 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE5 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK
730 740 750 760 770 780
pF1KE5 KEPDSD
::::::
NP_003 KEPDSD
>>NP_001288612 (OMIM: 605122) ATP-dependent RNA helicase (655 aa)
initn: 4393 init1: 4393 opt: 4393 Z-score: 4766.3 bits: 892.5 E(85289): 0
Smith-Waterman score: 4393; 100.0% identity (100.0% similar) in 655 aa overlap (132-786:1-655)
110 120 130 140 150 160
pF1KE5 KRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPF
::::::::::::::::::::::::::::::
NP_001 MQSHSLDVDIHIVLNDICFGAAHADDLFPF
10 20 30
170 180 190 200 210 220
pF1KE5 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE5 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE5 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE
160 170 180 190 200 210
350 360 370 380 390 400
pF1KE5 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP
220 230 240 250 260 270
410 420 430 440 450 460
pF1KE5 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT
280 290 300 310 320 330
470 480 490 500 510 520
pF1KE5 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA
340 350 360 370 380 390
530 540 550 560 570 580
pF1KE5 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK
400 410 420 430 440 450
590 600 610 620 630 640
pF1KE5 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL
460 470 480 490 500 510
650 660 670 680 690 700
pF1KE5 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG
520 530 540 550 560 570
710 720 730 740 750 760
pF1KE5 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE
580 590 600 610 620 630
770 780
pF1KE5 HNKEKTESGTHPKGTRRKKKEPDSD
:::::::::::::::::::::::::
NP_001 HNKEKTESGTHPKGTRRKKKEPDSD
640 650
>>NP_001310513 (OMIM: 605122) ATP-dependent RNA helicase (655 aa)
initn: 4393 init1: 4393 opt: 4393 Z-score: 4766.3 bits: 892.5 E(85289): 0
Smith-Waterman score: 4393; 100.0% identity (100.0% similar) in 655 aa overlap (132-786:1-655)
110 120 130 140 150 160
pF1KE5 KRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPF
::::::::::::::::::::::::::::::
NP_001 MQSHSLDVDIHIVLNDICFGAAHADDLFPF
10 20 30
170 180 190 200 210 220
pF1KE5 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKY
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE5 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSV
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE5 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE
160 170 180 190 200 210
350 360 370 380 390 400
pF1KE5 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPP
220 230 240 250 260 270
410 420 430 440 450 460
pF1KE5 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITT
280 290 300 310 320 330
470 480 490 500 510 520
pF1KE5 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFA
340 350 360 370 380 390
530 540 550 560 570 580
pF1KE5 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINK
400 410 420 430 440 450
590 600 610 620 630 640
pF1KE5 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWL
460 470 480 490 500 510
650 660 670 680 690 700
pF1KE5 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYRFMDMFPDASLIRDLQKELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSG
520 530 540 550 560 570
710 720 730 740 750 760
pF1KE5 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKSQARRTRGTKALGSKATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTE
580 590 600 610 620 630
770 780
pF1KE5 HNKEKTESGTHPKGTRRKKKEPDSD
:::::::::::::::::::::::::
NP_001 HNKEKTESGTHPKGTRRKKKEPDSD
640 650
>>NP_001310515 (OMIM: 605122) ATP-dependent RNA helicase (665 aa)
initn: 4249 init1: 4249 opt: 4249 Z-score: 4609.9 bits: 863.6 E(85289): 0
Smith-Waterman score: 4249; 100.0% identity (100.0% similar) in 634 aa overlap (153-786:32-665)
130 140 150 160 170 180
pF1KE5 AFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLRKI
::::::::::::::::::::::::::::::
NP_001 IFASVQALECSGSVSAQCVASTSWAQAILPAHADDLFPFFLRHAKQIFPVLDCKDDLRKI
10 20 30 40 50 60
190 200 210 220 230 240
pF1KE5 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE5 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG
130 140 150 160 170 180
310 320 330 340 350 360
pF1KE5 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD
190 200 210 220 230 240
370 380 390 400 410 420
pF1KE5 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV
250 260 270 280 290 300
430 440 450 460 470 480
pF1KE5 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE
310 320 330 340 350 360
490 500 510 520 530 540
pF1KE5 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV
370 380 390 400 410 420
550 560 570 580 590 600
pF1KE5 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP
430 440 450 460 470 480
610 620 630 640 650 660
pF1KE5 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL
490 500 510 520 530 540
670 680 690 700 710 720
pF1KE5 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE
550 560 570 580 590 600
730 740 750 760 770 780
pF1KE5 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE
610 620 630 640 650 660
pF1KE5 PDSD
::::
NP_001 PDSD
>>NP_001310514 (OMIM: 605122) ATP-dependent RNA helicase (665 aa)
initn: 4249 init1: 4249 opt: 4249 Z-score: 4609.9 bits: 863.6 E(85289): 0
Smith-Waterman score: 4249; 100.0% identity (100.0% similar) in 634 aa overlap (153-786:32-665)
130 140 150 160 170 180
pF1KE5 AFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLRKI
::::::::::::::::::::::::::::::
NP_001 IFASVQALECSGSVSAQCVASTSWAQAILPAHADDLFPFFLRHAKQIFPVLDCKDDLRKI
10 20 30 40 50 60
190 200 210 220 230 240
pF1KE5 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE
70 80 90 100 110 120
250 260 270 280 290 300
pF1KE5 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG
130 140 150 160 170 180
310 320 330 340 350 360
pF1KE5 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD
190 200 210 220 230 240
370 380 390 400 410 420
pF1KE5 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV
250 260 270 280 290 300
430 440 450 460 470 480
pF1KE5 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGE
310 320 330 340 350 360
490 500 510 520 530 540
pF1KE5 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQV
370 380 390 400 410 420
550 560 570 580 590 600
pF1KE5 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRNEP
430 440 450 460 470 480
610 620 630 640 650 660
pF1KE5 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQKEL
490 500 510 520 530 540
670 680 690 700 710 720
pF1KE5 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKATE
550 560 570 580 590 600
730 740 750 760 770 780
pF1KE5 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKKKE
610 620 630 640 650 660
pF1KE5 PDSD
::::
NP_001 PDSD
>>NP_001310517 (OMIM: 605122) ATP-dependent RNA helicase (457 aa)
initn: 3020 init1: 3020 opt: 3020 Z-score: 3279.0 bits: 616.8 E(85289): 6.7e-176
Smith-Waterman score: 3020; 100.0% identity (100.0% similar) in 457 aa overlap (330-786:1-457)
300 310 320 330 340 350
pF1KE5 ARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALE
::::::::::::::::::::::::::::::
NP_001 MELMYTTGEEVEVRDYKRLTPISVLDHALE
10 20 30
360 370 380 390 400 410
pF1KE5 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK
40 50 60 70 80 90
420 430 440 450 460 470
pF1KE5 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK
100 110 120 130 140 150
480 490 500 510 520 530
pF1KE5 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF
160 170 180 190 200 210
540 550 560 570 580 590
pF1KE5 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR
220 230 240 250 260 270
600 610 620 630 640 650
pF1KE5 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ
280 290 300 310 320 330
660 670 680 690 700 710
pF1KE5 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK
340 350 360 370 380 390
720 730 740 750 760 770
pF1KE5 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK
400 410 420 430 440 450
780
pF1KE5 KKEPDSD
:::::::
NP_001 KKEPDSD
>>NP_001310516 (OMIM: 605122) ATP-dependent RNA helicase (457 aa)
initn: 3020 init1: 3020 opt: 3020 Z-score: 3279.0 bits: 616.8 E(85289): 6.7e-176
Smith-Waterman score: 3020; 100.0% identity (100.0% similar) in 457 aa overlap (330-786:1-457)
300 310 320 330 340 350
pF1KE5 ARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALE
::::::::::::::::::::::::::::::
NP_001 MELMYTTGEEVEVRDYKRLTPISVLDHALE
10 20 30
360 370 380 390 400 410
pF1KE5 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK
40 50 60 70 80 90
420 430 440 450 460 470
pF1KE5 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFK
100 110 120 130 140 150
480 490 500 510 520 530
pF1KE5 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDF
160 170 180 190 200 210
540 550 560 570 580 590
pF1KE5 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR
220 230 240 250 260 270
600 610 620 630 640 650
pF1KE5 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQ
280 290 300 310 320 330
660 670 680 690 700 710
pF1KE5 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSK
340 350 360 370 380 390
720 730 740 750 760 770
pF1KE5 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRK
400 410 420 430 440 450
780
pF1KE5 KKEPDSD
:::::::
NP_001 KKEPDSD
786 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:00:22 2016 done: Tue Nov 8 06:00:23 2016
Total Scan time: 8.680 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]