FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5714, 786 aa
  1>>>pF1KE5714 786 - 786 aa - 786 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2690+/-0.000925; mu= 15.2720+/- 0.056
 mean_var=75.2737+/-14.946, 0's: 0 Z-trim(106.1): 23  B-trim: 0 in 0/51
 Lambda= 0.147827
 statistics sampled from 8804 (8808) to 8804 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.271), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS7287.1 SUPV3L1 gene_id:6832|Hs108|chr10        ( 786) 5261 1131.8       0


>>CCDS7287.1 SUPV3L1 gene_id:6832|Hs108|chr10             (786 aa)
 initn: 5261 init1: 5261 opt: 5261  Z-score: 6058.2  bits: 1131.8 E(32554):    0
Smith-Waterman score: 5261; 100.0% identity (100.0% similar) in 786 aa overlap (1-786:1-786)

               10        20        30        40        50        60
pF1KE5 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MSFSRALLWARLPAGRQAGHRAAICSALRPHFGPFPGVLGQVSVLATASSSASGGSKIPN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TSLFVPLTVKPQGPSADGDVGAELTRPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HQAFISFRNYIMQSHSLDVDIHIVLNDICFGAAHADDLFPFFLRHAKQIFPVLDCKDDLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALES
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSRN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EPLTFAWLRRYIKWPLLPPKNIKDLMDLEAVHDVLDLYLWLSYRFMDMFPDASLIRDLQK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE5 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ELDGIIQDGVHNITKLIKMSETHKLLNLEGFPSGSQSRLSGTLKSQARRTRGTKALGSKA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE5 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TEPPSPDAGELSLASRLVQQGLLTPDMLKQLEKEWMTQQTEHNKEKTESGTHPKGTRRKK
              730       740       750       760       770       780

             
pF1KE5 KEPDSD
       ::::::
CCDS72 KEPDSD
             




786 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 06:00:21 2016 done: Tue Nov  8 06:00:22 2016
 Total Scan time:  2.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]