Result of FASTA (omim) for
pFN21AE5685
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5685, 561 aa
1>>>pF1KE5685 561 - 561 aa - 561 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8215+/-0.00033; mu= 12.0304+/- 0.021
mean_var=124.1563+/-25.351, 0's: 0 Z-trim(118.4): 56 B-trim: 0 in 0/54
Lambda= 0.115104
statistics sampled from 31306 (31362) to 31306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.368), width: 16
Scan time: 9.360
The best scores are: opt bits E(85289)
NP_085097 (OMIM: 607342) cytoplasmic polyadenylati ( 561) 3887 656.8 5e-188
NP_001073002 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162
NP_001275748 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162
NP_001073003 (OMIM: 607342) cytoplasmic polyadenyl ( 486) 3372 571.3 2.5e-162
NP_001073001 (OMIM: 607342) cytoplasmic polyadenyl ( 491) 3352 568.0 2.5e-161
NP_001275749 (OMIM: 607342) cytoplasmic polyadenyl ( 335) 2355 402.3 1.3e-111
XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic ( 314) 744 134.7 4.1e-31
NP_001295122 (OMIM: 610607) cytoplasmic polyadenyl ( 322) 742 134.4 5.3e-31
NP_001295121 (OMIM: 610607) cytoplasmic polyadenyl ( 339) 742 134.4 5.5e-31
XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic ( 665) 744 135.0 7.4e-31
XP_005269687 (OMIM: 610606) PREDICTED: cytoplasmic ( 684) 744 135.0 7.6e-31
NP_001171608 (OMIM: 610606) cytoplasmic polyadenyl ( 684) 744 135.0 7.6e-31
XP_011537817 (OMIM: 610606) PREDICTED: cytoplasmic ( 692) 744 135.0 7.7e-31
NP_055727 (OMIM: 610606) cytoplasmic polyadenylati ( 698) 744 135.0 7.7e-31
XP_011537816 (OMIM: 610606) PREDICTED: cytoplasmic ( 707) 744 135.0 7.8e-31
XP_006717778 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 744 135.0 7.9e-31
XP_006717777 (OMIM: 610606) PREDICTED: cytoplasmic ( 715) 744 135.0 7.9e-31
NP_001295120 (OMIM: 610607) cytoplasmic polyadenyl ( 704) 742 134.7 9.8e-31
NP_001295118 (OMIM: 610607) cytoplasmic polyadenyl ( 712) 742 134.7 9.9e-31
XP_005266051 (OMIM: 610607) PREDICTED: cytoplasmic ( 721) 742 134.7 1e-30
NP_085130 (OMIM: 610607) cytoplasmic polyadenylati ( 729) 742 134.7 1e-30
XP_016863223 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 735 133.4 1.6e-30
XP_016863222 (OMIM: 610605) PREDICTED: cytoplasmic ( 463) 735 133.4 1.6e-30
NP_872587 (OMIM: 610605) cytoplasmic polyadenylati ( 996) 735 133.6 2.9e-30
NP_001170855 (OMIM: 610605) cytoplasmic polyadenyl ( 999) 735 133.6 2.9e-30
NP_001170854 (OMIM: 610605) cytoplasmic polyadenyl (1004) 735 133.6 2.9e-30
NP_001170852 (OMIM: 610605) cytoplasmic polyadenyl (1007) 735 133.6 2.9e-30
NP_872291 (OMIM: 610605) cytoplasmic polyadenylati (1026) 735 133.6 2.9e-30
XP_011512079 (OMIM: 610605) PREDICTED: cytoplasmic (1029) 735 133.6 3e-30
NP_001170853 (OMIM: 610605) cytoplasmic polyadenyl (1034) 735 133.6 3e-30
XP_005248192 (OMIM: 610605) PREDICTED: cytoplasmic (1037) 735 133.6 3e-30
XP_011537822 (OMIM: 610606) PREDICTED: cytoplasmic ( 598) 585 108.5 6.1e-23
XP_011537821 (OMIM: 610606) PREDICTED: cytoplasmic ( 621) 585 108.5 6.3e-23
XP_011537820 (OMIM: 610606) PREDICTED: cytoplasmic ( 640) 568 105.7 4.5e-22
>>NP_085097 (OMIM: 607342) cytoplasmic polyadenylation e (561 aa)
initn: 3887 init1: 3887 opt: 3887 Z-score: 3496.7 bits: 656.8 E(85289): 5e-188
Smith-Waterman score: 3887; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KE5 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MAFPLEEEAGRIKDCWDNQEAPALSTCSNANIFRRINAILDNSLDFSRVCTTPINRGIHD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 HLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLTGWDRPWSTQDSDSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 QSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSVRGSRLDTRPILDSRS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAAL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 AAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 PRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 FELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 LDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 KAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRH
490 500 510 520 530 540
550 560
pF1KE5 SMEGLRHHSPLMRNQKNRDSS
:::::::::::::::::::::
NP_085 SMEGLRHHSPLMRNQKNRDSS
550 560
>>NP_001073002 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa)
initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162
Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
400 410 420 430 440 450
530 540 550 560
pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
::::::::::::::::::::::::::::::::::::
NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480
>>NP_001275748 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa)
initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162
Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
400 410 420 430 440 450
530 540 550 560
pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
::::::::::::::::::::::::::::::::::::
NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480
>>NP_001073003 (OMIM: 607342) cytoplasmic polyadenylatio (486 aa)
initn: 3372 init1: 3372 opt: 3372 Z-score: 3035.4 bits: 571.3 E(85289): 2.5e-162
Smith-Waterman score: 3372; 100.0% identity (100.0% similar) in 486 aa overlap (76-561:1-486)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIP
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYP
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQ
400 410 420 430 440 450
530 540 550 560
pF1KE5 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
::::::::::::::::::::::::::::::::::::
NP_001 VCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480
>>NP_001073001 (OMIM: 607342) cytoplasmic polyadenylatio (491 aa)
initn: 1942 init1: 1942 opt: 3352 Z-score: 3017.4 bits: 568.0 E(85289): 2.5e-161
Smith-Waterman score: 3352; 99.0% identity (99.0% similar) in 491 aa overlap (76-561:1-491)
50 60 70 80 90 100
pF1KE5 FSRVCTTPINRGIHDHLPDFQDSEETVTSRMLFPTSAQESSRGLPDANDLCLGLQSLSLT
::::::::::::::::::::::::::::::
NP_001 MLFPTSAQESSRGLPDANDLCLGLQSLSLT
10 20 30
110 120 130 140 150 160
pF1KE5 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GWDRPWSTQDSDSSAQSSTHSVLSMLHNPLGNVLGKPPLSFLPLDPLGSDLVDKFPAPSV
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE5 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGSRLDTRPILDSRSSSPSDSDTSGFSSGSDHLSDLISSLRISPPLPFLSLSGGGPRDPL
100 110 120 130 140 150
230 240 250 260 270 280
pF1KE5 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KMGVGSRMDQEQAALAAVTPSPTSASKRWPGASVWPSWDLLEAPKDPFSIEREARLHRQA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE5 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKD
220 230 240 250 260 270
350 360 370 380 390 400
pF1KE5 GKHPRCPPKG-----YVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKE
280 290 300 310 320 330
410 420 430 440 450 460
pF1KE5 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTD
340 350 360 370 380 390
470 480 490 500 510 520
pF1KE5 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPF
400 410 420 430 440 450
530 540 550 560
pF1KE5 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
:::::::::::::::::::::::::::::::::::::::::
NP_001 FCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
460 470 480 490
>>NP_001275749 (OMIM: 607342) cytoplasmic polyadenylatio (335 aa)
initn: 2355 init1: 2355 opt: 2355 Z-score: 2124.9 bits: 402.3 E(85289): 1.3e-111
Smith-Waterman score: 2355; 100.0% identity (100.0% similar) in 335 aa overlap (227-561:1-335)
200 210 220 230 240 250
pF1KE5 HLSDLISSLRISPPLPFLSLSGGGPRDPLKMGVGSRMDQEQAALAAVTPSPTSASKRWPG
::::::::::::::::::::::::::::::
NP_001 MGVGSRMDQEQAALAAVTPSPTSASKRWPG
10 20 30
260 270 280 290 300 310
pF1KE5 ASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASVWPSWDLLEAPKDPFSIEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLG
40 50 60 70 80 90
320 330 340 350 360 370
pF1KE5 GVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSH
100 110 120 130 140 150
380 390 400 410 420 430
pF1KE5 DPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGML
160 170 180 190 200 210
440 450 460 470 480 490
pF1KE5 NAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFT
220 230 240 250 260 270
500 510 520 530 540 550
pF1KE5 KKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK
280 290 300 310 320 330
560
pF1KE5 NRDSS
:::::
NP_001 NRDSS
>>XP_016871416 (OMIM: 610606) PREDICTED: cytoplasmic pol (314 aa)
initn: 729 init1: 238 opt: 744 Z-score: 679.5 bits: 134.7 E(85289): 4.1e-31
Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:55-305)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
XP_016 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV
30 40 50 60 70 80
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: ..
XP_016 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD
90 100 110 120 130
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
XP_016 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
140 150 160 170 180 190
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :..
XP_016 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT
200 210 220 230 240 250
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
XP_016 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
260 270 280 290 300 310
>>NP_001295122 (OMIM: 610607) cytoplasmic polyadenylatio (322 aa)
initn: 728 init1: 238 opt: 742 Z-score: 677.6 bits: 134.4 E(85289): 5.3e-31
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:63-313)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
NP_001 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
40 50 60 70 80 90
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
NP_001 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
100 110 120 130 140
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
NP_001 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
150 160 170 180 190 200
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
NP_001 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
210 220 230 240 250 260
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
NP_001 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
270 280 290 300 310 320
>>NP_001295121 (OMIM: 610607) cytoplasmic polyadenylatio (339 aa)
initn: 728 init1: 238 opt: 742 Z-score: 677.3 bits: 134.4 E(85289): 5.5e-31
Smith-Waterman score: 742; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:80-330)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
NP_001 LDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLI
50 60 70 80 90 100
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: . :: . :. .:: ..
NP_001 VDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDAC----IEEDG--KLYLCVSSPTIKD
110 120 130 140 150 160
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
NP_001 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
170 180 190 200 210 220
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... .. :.:.. :: :.:.:: :..
NP_001 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGA
230 240 250 260 270 280
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
NP_001 RCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN
290 300 310 320 330
>>XP_011537819 (OMIM: 610606) PREDICTED: cytoplasmic pol (665 aa)
initn: 756 init1: 238 opt: 744 Z-score: 674.9 bits: 135.0 E(85289): 7.4e-31
Smith-Waterman score: 744; 44.7% identity (70.8% similar) in 257 aa overlap (309-558:406-656)
280 290 300 310 320 330
pF1KE5 ARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLS
:: :::.::.: :: : .. .:: :: :
XP_011 AFLDDSHGDQALSSGLSSPTRCQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLV
380 390 400 410 420 430
340 350 360 370 380 390
pF1KE5 VEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRC
:.:: : .. :::::..:.:. :.::..:..:: : :: . :. .:: ..
XP_011 VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC----LEEDG--KLYLCVSSPTIKD
440 450 460 470 480
400 410 420 430 440 450
pF1KE5 KEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGID
: ::. :: :.::.:: . :: ::: .:.:::.. : : :: :.. :.::: :::::
XP_011 KPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGID
490 500 510 520 530 540
460 470 480 490 500 510
pF1KE5 TDKH-KYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPY-LEDSLCHICSS-
:: . ::: :.:::.:.::.::. :.:: ::... . . :.:.. :: :.:..: :..
XP_011 TDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGT
550 560 570 580 590 600
520 530 540 550 560
pF1KE5 ----QPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS
. .:::: . .:..:.:. :: :: : . :.::... .:
XP_011 RCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS
610 620 630 640 650 660
561 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:50:43 2016 done: Tue Nov 8 05:50:44 2016
Total Scan time: 9.360 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]