FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5682, 548 aa
  1>>>pF1KE5682 548 - 548 aa - 548 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9404+/-0.00087; mu= -2.2873+/- 0.052
 mean_var=235.5638+/-48.094, 0's: 0 Z-trim(114.3): 31  B-trim: 0 in 0/56
 Lambda= 0.083564
 statistics sampled from 14856 (14881) to 14856 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.457), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS11119.1 WRAP53 gene_id:55135|Hs108|chr17       ( 548) 3843 476.2 4.4e-134


>>CCDS11119.1 WRAP53 gene_id:55135|Hs108|chr17            (548 aa)
 initn: 3843 init1: 3843 opt: 3843  Z-score: 2520.6  bits: 476.2 E(32554): 4.4e-134
Smith-Waterman score: 3843; 100.0% identity (100.0% similar) in 548 aa overlap (1-548:1-548)

               10        20        30        40        50        60
pF1KE5 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MKTLETQPLAPDCCPSDQDPAPAHPSPHASPMNKNADSELMPPPPERGDPPRLSPDPVAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAVSQELREGDPVSLSTPLETEFGSPSELSPRIEEQELSENTSLPAEEANGSLSEEEANG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PELGSGKAMEDTSGEPAAEDEGDTAWNYSFSQLPRFLSGSWSEFSTQPENFLKGCKWAPD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSCILTNSADNILRIYNLPPELYHEGEQVEYAEMVPVLRMVEGDTIYDYCWYSLMSSAQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQPLYACGSYGRSLGLYAWDDGSPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTTNQRIYFD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDPTGQFLVSGSTSGAVSVWDTDGPGNDGKPEPVLSFLPQKDCTNGVSLHPSLPLLATAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GQRVFPEPTESGDEGEELGLPLLSTRHVHLECRLQLWWCGGAPDSSIPDDHQGEKGQGGT
              490       500       510       520       530       540

               
pF1KE5 EGGVGELI
       ::::::::
CCDS11 EGGVGELI
               




548 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:49:23 2016 done: Tue Nov  8 05:49:24 2016
 Total Scan time:  2.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]