FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5664, 524 aa
  1>>>pF1KE5664 524 - 524 aa - 524 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9819+/-0.000404; mu= 20.0843+/- 0.025
 mean_var=67.2782+/-13.236, 0's: 0 Z-trim(111.4): 27  B-trim: 7 in 1/54
 Lambda= 0.156364
 statistics sampled from 20043 (20052) to 20043 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.235), width:  16
 Scan time:  9.130

The best scores are:                                      opt bits E(85289)
NP_660286 (OMIM: 617081) metalloendopeptidase OMA1 ( 524) 3550 810.2       0


>>NP_660286 (OMIM: 617081) metalloendopeptidase OMA1, mi  (524 aa)
 initn: 3550 init1: 3550 opt: 3550  Z-score: 4326.8  bits: 810.2 E(85289):    0
Smith-Waterman score: 3550; 100.0% identity (100.0% similar) in 524 aa overlap (1-524:1-524)

               10        20        30        40        50        60
pF1KE5 MSFICGLQSAARNHVFFRFNSLSNWRKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MSFICGLQSAARNHVFFRFNSLSNWRKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSFLPGNFHFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 WSFLPGNFHFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 VLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLFAIIVGRGIRKWWQALPPNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 VLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLFAIIVGRGIRKWWQALPPNK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 KEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLLLLGKEQFRLLSELE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 YEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 YEAWMEEFKNDMLTEKDARYLAVKEVLCHLIECNKDVPGISQINWVIHVVDSPIINAFVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 PNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 PNGQMFVFTGFLNSVTDIHQLSFLLGHEIAHAVLGHAAEKAGMVHLLDFLGMIFLTMIWA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 ICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 ICPRDSLALLCQWIQSKLQEYMFNRPYSRKLEAEADKIGLLLAAKACADIRASSVFWQQM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPLSNPDPRLLFKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 EFVDSLHGQPKMPEWLSTHPSHGNRVEYLDRLIPQALKIREMCNCPPLSNPDPRLLFKLS
              430       440       450       460       470       480

              490       500       510       520    
pF1KE5 TKHFLEESEKEDLNITKKQKMDTLPIQKQEQIPLTYIVEKRTGS
       ::::::::::::::::::::::::::::::::::::::::::::
NP_660 TKHFLEESEKEDLNITKKQKMDTLPIQKQEQIPLTYIVEKRTGS
              490       500       510       520    




524 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:39:52 2016 done: Tue Nov  8 05:39:54 2016
 Total Scan time:  9.130 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]