Result of FASTA (omim) for
pFN21AE5660
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5660, 508 aa
1>>>pF1KE5660 508 - 508 aa - 508 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4722+/-0.000382; mu= 12.4378+/- 0.024
mean_var=90.2688+/-17.760, 0's: 0 Z-trim(114.5): 51 B-trim: 0 in 0/53
Lambda= 0.134991
statistics sampled from 24436 (24444) to 24436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.287), width: 16
Scan time: 6.310
The best scores are: opt bits E(85289)
NP_001135915 (OMIM: 609842,616460) enhancer of mRN ( 508) 3460 684.2 2.4e-196
NP_001135916 (OMIM: 609842,616460) enhancer of mRN ( 508) 3460 684.2 2.4e-196
NP_079359 (OMIM: 609842,616460) enhancer of mRNA-d ( 508) 3460 684.2 2.4e-196
XP_011520394 (OMIM: 609842,616460) PREDICTED: enha ( 325) 2220 442.6 8.2e-124
>>NP_001135915 (OMIM: 609842,616460) enhancer of mRNA-de (508 aa)
initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196
Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)
10 20 30 40 50 60
pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
430 440 450 460 470 480
490 500
pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA
::::::::::::::::::::::::::::
NP_001 IPQQVFQEVGINYHSPFGCKFVIPLHSA
490 500
>>NP_001135916 (OMIM: 609842,616460) enhancer of mRNA-de (508 aa)
initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196
Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)
10 20 30 40 50 60
pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
430 440 450 460 470 480
490 500
pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA
::::::::::::::::::::::::::::
NP_001 IPQQVFQEVGINYHSPFGCKFVIPLHSA
490 500
>>NP_079359 (OMIM: 609842,616460) enhancer of mRNA-decap (508 aa)
initn: 3460 init1: 3460 opt: 3460 Z-score: 3645.9 bits: 684.2 E(85289): 2.4e-196
Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)
10 20 30 40 50 60
pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
430 440 450 460 470 480
490 500
pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA
::::::::::::::::::::::::::::
NP_079 IPQQVFQEVGINYHSPFGCKFVIPLHSA
490 500
>>XP_011520394 (OMIM: 609842,616460) PREDICTED: enhancer (325 aa)
initn: 2220 init1: 2220 opt: 2220 Z-score: 2343.9 bits: 442.6 E(85289): 8.2e-124
Smith-Waterman score: 2220; 100.0% identity (100.0% similar) in 325 aa overlap (184-508:1-325)
160 170 180 190 200 210
pF1KE5 SFRRRHNSWSSSSRHPNQATPKKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALF
::::::::::::::::::::::::::::::
XP_011 MKNKDDECFGDDIEEIPDTDFDFEGNLALF
10 20 30
220 230 240 250 260 270
pF1KE5 DKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCT
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE5 DSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSGLVVPSISYELHKKLLSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQ
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE5 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQV
160 170 180 190 200 210
400 410 420 430 440 450
pF1KE5 SSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSLKDLPTSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGI
220 230 240 250 260 270
460 470 480 490 500
pF1KE5 DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAKWSLALGLPLPLGEHAGRIYLCDIGIPQQVFQEVGINYHSPFGCKFVIPLHSA
280 290 300 310 320
508 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:37:38 2016 done: Tue Nov 8 05:37:39 2016
Total Scan time: 6.310 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]