FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5660, 508 aa
  1>>>pF1KE5660 508 - 508 aa - 508 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1798+/-0.000879; mu= 13.7138+/- 0.053
 mean_var=81.6953+/-15.855, 0's: 0 Z-trim(107.7): 20  B-trim: 0 in 0/52
 Lambda= 0.141898
 statistics sampled from 9709 (9721) to 9709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.299), width:  16
 Scan time:  2.480

The best scores are:                                      opt bits E(32554)
CCDS10267.1 EDC3 gene_id:80153|Hs108|chr15         ( 508) 3460 718.2 5.4e-207


>>CCDS10267.1 EDC3 gene_id:80153|Hs108|chr15              (508 aa)
 initn: 3460 init1: 3460 opt: 3460  Z-score: 3829.7  bits: 718.2 E(32554): 5.4e-207
Smith-Waterman score: 3460; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)

               10        20        30        40        50        60
pF1KE5 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
              430       440       450       460       470       480

              490       500        
pF1KE5 IPQQVFQEVGINYHSPFGCKFVIPLHSA
       ::::::::::::::::::::::::::::
CCDS10 IPQQVFQEVGINYHSPFGCKFVIPLHSA
              490       500        




508 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:37:37 2016 done: Tue Nov  8 05:37:37 2016
 Total Scan time:  2.480 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]