Result of FASTA (omim) for
pFN21AE5656
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5656, 478 aa
1>>>pF1KE5656 478 - 478 aa - 478 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4192+/-0.000432; mu= 18.0468+/- 0.027
mean_var=77.5107+/-15.180, 0's: 0 Z-trim(111.6): 143 B-trim: 252 in 1/49
Lambda= 0.145678
statistics sampled from 20123 (20298) to 20123 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.238), width: 16
Scan time: 8.170
The best scores are: opt bits E(85289)
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479) 3012 642.9 5.7e-184
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539) 3012 643.0 6.2e-184
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484) 2907 620.8 2.5e-177
NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146
XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2410 516.3 5.7e-146
NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146
XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2410 516.3 5.7e-146
NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146
NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448) 2271 487.2 4.1e-137
NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453) 2271 487.2 4.1e-137
XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508) 2271 487.2 4.5e-137
NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328) 2143 460.2 4e-129
XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482) 2072 445.4 1.7e-124
NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483) 2072 445.4 1.7e-124
XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486) 2072 445.4 1.7e-124
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 1808 389.8 6.9e-108
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 913 201.7 3.1e-51
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 908 200.7 6.5e-51
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 870 192.7 1.7e-48
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 724 162.1 3.3e-39
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 724 162.1 3.3e-39
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 724 162.1 3.3e-39
NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 716 160.3 9.5e-39
NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 716 160.3 9.5e-39
NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 679 152.5 1.8e-36
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824) 673 151.5 8.4e-36
XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390) 656 147.7 5.5e-35
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 587 133.2 1.4e-30
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 553 126.3 3.1e-28
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 553 126.3 3.6e-28
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 553 126.3 3.6e-28
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 553 126.3 3.6e-28
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 553 126.3 3.6e-28
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 551 125.8 4.3e-28
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 524 120.1 1.9e-26
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 519 119.0 3.7e-26
XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434) 514 117.9 5.8e-26
XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581) 502 115.4 4.2e-25
NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599) 502 115.5 4.3e-25
NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491) 493 113.5 1.4e-24
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 495 114.1 1.6e-24
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 495 114.1 1.6e-24
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 490 112.8 1.9e-24
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.9 2.2e-24
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.9 2.2e-24
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 490 112.9 2.5e-24
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 490 113.0 2.6e-24
>>NP_009173 (OMIM: 605812) ATP-dependent RNA helicase DD (479 aa)
initn: 2835 init1: 2835 opt: 3012 Z-score: 3423.9 bits: 642.9 E(85289): 5.7e-184
Smith-Waterman score: 3012; 96.0% identity (99.6% similar) in 479 aa overlap (1-478:1-479)
10 20 30 40 50
pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKEDRAAQS
::::::::::::::::..:..::..::::.: :::: ..::...::::::::::::::::
NP_009 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGK
::::.:::::::::::::::::::::::::::::.:::...:::::::::::::::::::
NP_009 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
430 440 450 460 470
>>XP_011521134 (OMIM: 605812) PREDICTED: ATP-dependent R (539 aa)
initn: 2835 init1: 2835 opt: 3012 Z-score: 3423.1 bits: 643.0 E(85289): 6.2e-184
Smith-Waterman score: 3012; 96.0% identity (99.6% similar) in 479 aa overlap (1-478:61-539)
10 20 30
pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKV
::::::::::::::::..:..::..::::.
XP_011 AEPAANPRSPRSLVPSLESTSTSVPPAPGTMATDSWALAVDEQEAAAESLSNLHLKEEKI
40 50 60 70 80 90
40 50 60 70 80
pF1KE5 KADTNG-IIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS
: :::: ..::...::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE5 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_011 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL
160 170 180 190 200 210
150 160 170 180 190 200
pF1KE5 AMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS
::::.:::...:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS
220 230 240 250 260 270
210 220 230 240 250 260
pF1KE5 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM
280 290 300 310 320 330
270 280 290 300 310 320
pF1KE5 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA
340 350 360 370 380 390
330 340 350 360 370 380
pF1KE5 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT
400 410 420 430 440 450
390 400 410 420 430 440
pF1KE5 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN
460 470 480 490 500 510
450 460 470
pF1KE5 ILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::
XP_011 ILNRIQEHFNKKIERLDTDDLDEIEKIAN
520 530
>>XP_011521136 (OMIM: 605812) PREDICTED: ATP-dependent R (484 aa)
initn: 2835 init1: 2835 opt: 2907 Z-score: 3304.5 bits: 620.8 E(85289): 2.5e-177
Smith-Waterman score: 2907; 95.9% identity (99.4% similar) in 463 aa overlap (17-478:22-484)
10 20 30 40 50
pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKED
: ...::..::::.: :::: ..::...:::::::::::
XP_011 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 SKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELA
:::::::::.:::::::::::::::::::::::::::::.:::...::::::::::::::
XP_011 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
430 440 450 460 470 480
pF1KE5 KIAN
::::
XP_011 KIAN
>>NP_001244102 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146
Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370)
80 90 100 110 120 130
pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ
:::::::::::::::.::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
:::::::::::::::.:::...::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>XP_006721190 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa)
initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146
Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370)
80 90 100 110 120 130
pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ
:::::::::::::::.::::::::::::::
XP_006 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
:::::::::::::::.:::...::::::::::::::::::::::::::::::::::::::
XP_006 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
XP_006 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001014449 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146
Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370)
80 90 100 110 120 130
pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ
:::::::::::::::.::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
:::::::::::::::.:::...::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>XP_016878379 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa)
initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146
Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370)
80 90 100 110 120 130
pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ
:::::::::::::::.::::::::::::::
XP_016 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
:::::::::::::::.:::...::::::::::::::::::::::::::::::::::::::
XP_016 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
XP_016 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001244103 (OMIM: 605812) ATP-dependent RNA helicase (370 aa)
initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146
Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370)
80 90 100 110 120 130
pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ
:::::::::::::::.::::::::::::::
NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ
10 20 30
140 150 160 170 180 190
pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
:::::::::::::::.:::...::::::::::::::::::::::::::::::::::::::
NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF
220 230 240 250 260 270
380 390 400 410 420 430
pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA
280 290 300 310 320 330
440 450 460 470
pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
::::::::::::::::::::::::::::::::::::::::
NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
340 350 360 370
>>NP_001014451 (OMIM: 605812) ATP-dependent RNA helicase (448 aa)
initn: 2464 init1: 2271 opt: 2271 Z-score: 2582.6 bits: 487.2 E(85289): 4.1e-137
Smith-Waterman score: 2735; 89.8% identity (93.1% similar) in 479 aa overlap (1-478:1-448)
10 20 30 40 50
pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKEDRAAQS
::::::::::::::::..:..::..::::.: :::: ..::...::::::::::::::::
NP_001 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
:::::::::::::::::::::::::::::::::::::::
NP_001 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL---------------------
70 80 90
120 130 140 150 160 170
pF1KE5 NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGK
::::::::::::::::::::::::.:::...:::::::::::::::::::
NP_001 ----------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK
100 110 120 130 140
180 190 200 210 220 230
pF1KE5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
270 280 290 300 310 320
360 370 380 390 400 410
pF1KE5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
330 340 350 360 370 380
420 430 440 450 460 470
pF1KE5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN
390 400 410 420 430 440
>>NP_001244101 (OMIM: 605812) ATP-dependent RNA helicase (453 aa)
initn: 2359 init1: 2271 opt: 2271 Z-score: 2582.6 bits: 487.2 E(85289): 4.1e-137
Smith-Waterman score: 2630; 89.4% identity (92.7% similar) in 463 aa overlap (17-478:22-453)
10 20 30 40 50
pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKED
: ...::..::::.: :::: ..::...:::::::::::
NP_001 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP
::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL----------------
70 80 90 100
120 130 140 150 160 170
pF1KE5 SKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELA
::::::::::::::::::::::::.:::...::::::::::::::
NP_001 ---------------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA
110 120 130 140
180 190 200 210 220 230
pF1KE5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK
150 160 170 180 190 200
240 250 260 270 280 290
pF1KE5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KE5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK
270 280 290 300 310 320
360 370 380 390 400 410
pF1KE5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD
330 340 350 360 370 380
420 430 440 450 460 470
pF1KE5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE
390 400 410 420 430 440
pF1KE5 KIAN
::::
NP_001 KIAN
450
478 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:35:12 2016 done: Tue Nov 8 05:35:13 2016
Total Scan time: 8.170 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]