Result of FASTA (omim) for
pFN21AE5648
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5648, 485 aa
1>>>pF1KE5648 485 - 485 aa - 485 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2755+/-0.000354; mu= 18.2319+/- 0.022
mean_var=68.1223+/-13.095, 0's: 0 Z-trim(114.6): 16 B-trim: 0 in 0/54
Lambda= 0.155392
statistics sampled from 24533 (24545) to 24533 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.288), width: 16
Scan time: 6.930
The best scores are: opt bits E(85289)
NP_009146 (OMIM: 604983,610131) DNA polymerase sub ( 485) 3295 747.8 1.6e-215
XP_016879561 (OMIM: 604983,610131) PREDICTED: DNA ( 398) 2751 625.8 7e-179
XP_006721714 (OMIM: 604983,610131) PREDICTED: DNA ( 330) 2249 513.2 4.6e-145
>>NP_009146 (OMIM: 604983,610131) DNA polymerase subunit (485 aa)
initn: 3295 init1: 3295 opt: 3295 Z-score: 3990.3 bits: 747.8 E(85289): 1.6e-215
Smith-Waterman score: 3295; 99.8% identity (100.0% similar) in 485 aa overlap (1-485:1-485)
10 20 30 40 50 60
pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPAYLET
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_009 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLET
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS
430 440 450 460 470 480
pF1KE5 SAKNV
:::::
NP_009 SAKNV
>>XP_016879561 (OMIM: 604983,610131) PREDICTED: DNA poly (398 aa)
initn: 2751 init1: 2751 opt: 2751 Z-score: 3332.4 bits: 625.8 E(85289): 7e-179
Smith-Waterman score: 2751; 100.0% identity (100.0% similar) in 398 aa overlap (1-398:1-398)
10 20 30 40 50 60
pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPAYLET
::::::::::::::::::::::::::::::::::::::
XP_016 FTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQV
370 380 390
430 440 450 460 470 480
pF1KE5 MQSSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYIS
>>XP_006721714 (OMIM: 604983,610131) PREDICTED: DNA poly (330 aa)
initn: 2249 init1: 2249 opt: 2249 Z-score: 2725.4 bits: 513.2 E(85289): 4.6e-145
Smith-Waterman score: 2249; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)
10 20 30 40 50 60
pF1KE5 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MRSRVAVRACHKVCRCLLSGFGGRVDAGQPELLTERSSPKGGHVKSHAELEGNGEHPEAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GSGEGSEALLEICQRRHFLSGSKQQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWTSVVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FREQVFPVDALHHKPGPLLPGDSAFRLVSAETLREILQDKELSKEQLVAFLENVLKTSGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 ETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENS
:::::::::::::::::::::::
XP_006 ETLWNLGDHELLHMYPGNVSKLHMQRHSPT
310 320 330
485 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:32:12 2016 done: Tue Nov 8 05:32:13 2016
Total Scan time: 6.930 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]