FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5637, 504 aa
  1>>>pF1KE5637 504 - 504 aa - 504 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6380+/-0.00117; mu= 17.1563+/- 0.071
 mean_var=78.1174+/-15.669, 0's: 0 Z-trim(102.5): 22  B-trim: 2 in 1/47
 Lambda= 0.145111
 statistics sampled from 6959 (6965) to 6959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.214), width:  16
 Scan time:  2.420

The best scores are:                                      opt bits E(32554)
CCDS9652.1 SRP54 gene_id:6729|Hs108|chr14          ( 504) 3269 694.4 7.4e-200
CCDS53893.1 SRP54 gene_id:6729|Hs108|chr14         ( 455) 2938 625.1 4.9e-179


>>CCDS9652.1 SRP54 gene_id:6729|Hs108|chr14               (504 aa)
 initn: 3269 init1: 3269 opt: 3269  Z-score: 3701.6  bits: 694.4 E(32554): 7.4e-200
Smith-Waterman score: 3269; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)

               10        20        30        40        50        60
pF1KE5 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 DVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 EGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 SKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGL
              430       440       450       460       470       480

              490       500    
pF1KE5 QSMMRQFQQGAAGNMKGMMGFNNM
       ::::::::::::::::::::::::
CCDS96 QSMMRQFQQGAAGNMKGMMGFNNM
              490       500    

>>CCDS53893.1 SRP54 gene_id:6729|Hs108|chr14              (455 aa)
 initn: 2938 init1: 2938 opt: 2938  Z-score: 3327.7  bits: 625.1 E(32554): 4.9e-179
Smith-Waterman score: 2938; 99.8% identity (100.0% similar) in 448 aa overlap (57-504:8-455)

         30        40        50        60        70        80      
pF1KE5 VLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL
                                     .:::::::::::::::::::::::::::::
CCDS53                        MPPLSMKRSAIDLEEMASGLNKRKMIQHAVFKELVKL
                                      10        20        30       

         90       100       110       120       130       140      
pF1KE5 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD
        40        50        60        70        80        90       

        150       160       170       180       190       200      
pF1KE5 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEML
       100       110       120       130       140       150       

        210       220       230       240       250       260      
pF1KE5 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAAT
       160       170       180       190       200       210       

        270       280       290       300       310       320      
pF1KE5 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQ
       220       230       240       250       260       270       

        330       340       350       360       370       380      
pF1KE5 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQE
       280       290       300       310       320       330       

        390       400       410       420       430       440      
pF1KE5 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM
       340       350       360       370       380       390       

        450       460       470       480       490       500    
pF1KE5 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM
       400       410       420       430       440       450     




504 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:25:11 2016 done: Tue Nov  8 05:25:11 2016
 Total Scan time:  2.420 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]